Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | IRAK3|DYRK2 | IRAK3 | DYRK2 | 12 | 12 | 1 | 1 | 3 | 3 | 2 | 0.019 | 66622150 | 68050886 | tier1 | Out-of-frame | 8338 | non-validated | 0.38506 |
| LUAD | TCGA-97-7552-01A | TCGA-97-7552 | LYZ|SUPT16H | LYZ | SUPT16H | 12 | 14 | 1 | -1 | 2 | 19 | 4 | 0.006 | 69748014 | 21829491 | tier4 | 3UTR-CDS | 9722 | NA | 0.37457 |
| LAML | TCGA-AB-2954-03A | TCGA-AB-2954 | LYZ|TYK2 | LYZ | TYK2 | 12 | 19 | 1 | -1 | 2 | 37 | 20 | 2.9 | 69748014 | 10491352 | tier3 | 3UTR-5UTR | 9723 | NA | 0.37643 |
| LAML | TCGA-AB-2826-03A | TCGA-AB-2826 | LYZ|ANXA1 | LYZ | ANXA1 | 12 | 9 | 1 | 1 | 2 | 24 | 13 | 1.5 | 69748014 | 75772570 | tier3 | 3UTR-5UTR | 9714 | NA | 0.37554 |
| LAML | TCGA-AB-2837-03A | TCGA-AB-2837 | LYZ|ANXA1 | LYZ | ANXA1 | 12 | 9 | 1 | 1 | 2 | 89 | 53 | 1.5 | 69748014 | 75772570 | tier3 | 3UTR-5UTR | 9715 | NA | 0.37554 |
| LAML | TCGA-AB-2848-03A | TCGA-AB-2848 | LYZ|STAT6 | LYZ | STAT6 | 12 | 12 | 1 | -1 | 2 | 37 | 19 | 0.76 | 69748014 | 57496773 | tier4 | NA | 9720 | NA | 0.37428 |
| LAML | TCGA-AB-2873-03A | TCGA-AB-2873 | LYZ|STAT6 | LYZ | STAT6 | 12 | 12 | 1 | -1 | 2 | 84 | 49 | 0.76 | 69748014 | 57496773 | tier3 | NA | 9721 | NA | 0.37428 |
| COAD | TCGA-G4-6299-01A | TCGA-G4-6299 | LYZ|DDX21 | LYZ | DDX21 | 12 | 10 | 1 | 1 | 2 | 127 | 108 | 0.26 | 69748014 | 70723858 | tier4 | NA | 9718 | NA | 0.36884 |
| COAD | TCGA-F4-6570-01A | TCGA-F4-6570 | LYZ|NDUFV1 | LYZ | NDUFV1 | 12 | 11 | 1 | 1 | 2 | 7 | 6 | 100 | 69748014 | 67375697 | tier4 | NA | 9719 | NA | 0.35855 |
| LAML | TCGA-AB-2835-03A | TCGA-AB-2835 | LYZ|DDX21 | LYZ | DDX21 | 12 | 10 | 1 | 1 | 3 | 124 | 81 | 0.26 | 69748014 | 70723858 | tier1 | NA | 9717 | NA | 0.36884 |
| LUSC | TCGA-90-A4EE-01A | TCGA-90-A4EE | LYZ|BIRC6 | LYZ | BIRC6 | 12 | 2 | 1 | 1 | 2 | 28 | 26 | 0.02 | 69748014 | 32820101 | tier4 | 3UTR-CDS | 9716 | NA | 0.3719 |
| HNSC | TCGA-CN-4736-01A | TCGA-CN-4736 | FLT3LG|ALDH16A1 | FLT3LG | ALDH16A1 | 19 | 19 | 1 | 1 | 9 | 12 | 10 | 0.032 | 49979823 | 49961743 | tier1 | In-frame | 6575 | NA | 0.36316 |
| UCS | TCGA-N5-A4RA-01A | TCGA-N5-A4RA | GNPTG|RAB40C | GNPTG | RAB40C | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 0.41 | 1402307 | 675432 | tier1 | Out-of-frame | 7254 | NA | 0.35973 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | LAMB1|TYK2 | LAMB1 | TYK2 | 7 | 19 | -1 | -1 | 2 | 18 | 1 | 0.89 | 107564248 | 10491352 | tier3 | 3UTR-5UTR | 9211 | NA | 0.37797 |
| HNSC | TCGA-CN-5359-01A | TCGA-CN-5359 | LAMB1|ATXN7L1 | LAMB1 | ATXN7L1 | 7 | 7 | -1 | -1 | 7 | 5 | 5 | 1.1 | 107626467 | 105401909 | tier1 | In-frame | 9207 | NA | 0.36118 |
| HNSC | TCGA-BA-6868-01B | TCGA-BA-6868 | LAMB1|PUS7 | LAMB1 | PUS7 | 7 | 7 | -1 | -1 | 298 | 191 | 178 | 0.72 | 107626467 | 105098373 | tier1 | In-frame | 9210 | NA | 0.35939 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | LAMB1|HBP1 | LAMB1 | HBP1 | 7 | 7 | -1 | 1 | 124 | 68 | 66 | 0.58 | 107601651 | 106820324 | tier1 | CDS-5UTR | 9208 | NA | 0.37253 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | LAMB1|NRCAM | LAMB1 | NRCAM | 7 | 7 | -1 | -1 | 21 | 15 | 12 | 0.39 | 107626467 | 107800937 | tier1 | In-frame | 9209 | NA | 0.36458 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | DLD|SHPRH | DLD | SHPRH | 7 | 6 | 1 | -1 | 15 | 8 | 7 | 0.18 | 107542838 | 146185627 | tier1 | Out-of-frame | 4865 | NA | 0.36635 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | DLD|SCEL | DLD | SCEL | 7 | 13 | 1 | 1 | 51 | 25 | 24 | 0.95 | 107531734 | 78171680 | tier1 | Out-of-frame | 4864 | NA | 0.35131 |
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