Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 63 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-VP-A87D-01A | TCGA-VP-A87D | TASP1|ESF1 | TASP1 | ESF1 | 20 | 20 | -1 | -1 | 16 | 13 | 13 | 3.3 | 13610581 | 13714489 | tier1 | In-frame | 17422 | NA | 0 |
| PRAD | TCGA-KK-A7AU-01A | TCGA-KK-A7AU | TASP1|MACROD2 | TASP1 | MACROD2 | 20 | 20 | -1 | 1 | 3 | 2 | 2 | 1.5 | 13567897 | 14665489 | tier1 | In-frame | 17424 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | TASP1|SEL1L2 | TASP1 | SEL1L2 | 20 | 20 | -1 | -1 | 3 | 3 | 3 | 0.19 | 13550154 | 13912417 | tier1 | Out-of-frame | 17426 | NA | 0 |
| CESC | TCGA-VS-A9UB-01A | TCGA-VS-A9UB | OAS1|RPH3A | OAS1 | RPH3A | 12 | 12 | 1 | 1 | 6 | 4 | 3 | 1.3 | 113349040 | 113307564 | tier1 | Out-of-frame | 11981 | NA | 0.36212 |
| PCPG | TCGA-QR-A700-01A | TCGA-QR-A700 | CHGB|CLU | CHGB | CLU | 20 | 8 | 1 | -1 | 3 | 1 | 1 | 3.4 | 5903719 | 27472215 | tier4 | NA | 3668 | NA | 0.36511 |
| PCPG | TCGA-QR-A6GW-01A | TCGA-QR-A6GW | CHGB|IGF2 | CHGB | IGF2 | 20 | 11 | 1 | -1 | 3 | 11 | 8 | 0.51 | 5903719 | 2154895 | tier1 | NA | 3669 | NA | 0.36649 |
| PCPG | TCGA-S7-A7X2-01A | TCGA-S7-A7X2 | CHGB|IGF2 | CHGB | IGF2 | 20 | 11 | 1 | -1 | 4 | 12 | 11 | 0.51 | 5903719 | 2154895 | tier1 | NA | 3670 | NA | 0.36649 |
| PCPG | TCGA-WB-A819-01A | TCGA-WB-A819 | CHGB|IGF2 | CHGB | IGF2 | 20 | 11 | 1 | -1 | 4 | 13 | 12 | 0.51 | 5903719 | 2154895 | tier4 | NA | 3671 | NA | 0.36649 |
| PCPG | TCGA-RW-A68C-01A | TCGA-RW-A68C | CHGB|AC011333.1 | CHGB | AC011333.1 | 20 | 5 | 1 | 1 | 2 | 33 | 13 | 0.22 | 5906007 | 173473096 | tier3 | NA | 3667 | NA | 0.35837 |
| PCPG | TCGA-P8-A6RY-01A | TCGA-P8-A6RY | CHGB|LIMCH1 | CHGB | LIMCH1 | 20 | 4 | 1 | 1 | 3 | 1 | 1 | 2.3 | 5903719 | 41648502 | tier4 | NA | 3672 | NA | 0.36542 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | NOS1|UBC | NOS1 | UBC | 12 | 12 | -1 | -1 | 6 | 9 | 7 | 0.47 | 117723046 | 125399308 | tier1 | CDS-5UTR | 11647 | NA | 0.38165 |
| BRCA | TCGA-D8-A1XU-01A | TCGA-D8-A1XU | FUS|CHD1 | FUS | CHD1 | 16 | 5 | 1 | -1 | 2 | 6 | 6 | 0.035 | 31202923 | 98219587 | tier4 | NA | 6826 | NA | 0.38113 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | FUS|PRSS36 | FUS | PRSS36 | 16 | 16 | 1 | -1 | 4 | 6 | 4 | 0.21 | 31195717 | 31161052 | tier1 | In-frame | 6828 | NA | 0.38039 |
| SARC | TCGA-Z4-A9VC-01A | TCGA-Z4-A9VC | FUS|DDIT3 | FUS | DDIT3 | 16 | 12 | 1 | -1 | 132 | 169 | 155 | 0.27 | 31199678 | 57911536 | tier1 | CDS-5UTR | 6827 | NA | 0.38341 |
| ACC | TCGA-OR-A5LD-01A | TCGA-OR-A5LD | GANAB|C11orf48 | GANAB | C11orf48 | 11 | 11 | -1 | -1 | 143 | 85 | 78 | 0.4 | 62407099 | 62430805 | tier1 | Out-of-frame | 6945 | NA | 0 |
| ACC | TCGA-OR-A5LD-01A | TCGA-OR-A5LD | GANAB|RP11-831H9.11 | GANAB | RP11-831H9.11 | 11 | 11 | -1 | -1 | 82 | 20 | 20 | 100 | 62407099 | 62430805 | tier1 | In-frame | 6946 | NA | 0.3487 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | GANAB|ZNF76 | GANAB | ZNF76 | 11 | 6 | -1 | 1 | 2 | 7 | 7 | 0.38 | 62400037 | 35248833 | tier2 | CDS-5UTR | 6947 | validated | 0.36437 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | LTBP4|SUPT16H | LTBP4 | SUPT16H | 19 | 14 | 1 | -1 | 2 | 4 | 4 | 0.86 | 41135722 | 21829491 | tier3 | NA | 9658 | NA | 0.37965 |
| BRCA | TCGA-EW-A1PH-01A | TCGA-EW-A1PH | LTBP4|MYO1B | LTBP4 | MYO1B | 19 | 2 | 1 | 1 | 23 | 29 | 24 | 0.93 | 41120352 | 192278774 | tier1 | Out-of-frame | 9657 | non-validated | 0.37311 |
| LUSC | TCGA-77-7338-01A | TCGA-77-7338 | ICAM1|HNRNPM | ICAM1 | HNRNPM | 19 | 19 | 1 | 1 | 68 | 86 | 79 | 0.3 | 10385704 | 8550487 | tier1 | In-frame | 8046 | NA | 0.37949 |
|
Showing page 63 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.