Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-6937-01A | TCGA-CV-6937 | FKBP1A|CDS2 | FKBP1A | CDS2 | 20 | 20 | -1 | 1 | 43 | 34 | 28 | 0.15 | 1373478 | 5169713 | tier2 | Out-of-frame | 6550 | NA | 0.36684 |
| SARC | TCGA-DX-AB2W-01A | TCGA-DX-AB2W | FKBP1A|C20orf61 | FKBP1A | C20orf61 | 20 | 20 | -1 | -1 | 101 | 88 | 81 | 100 | 1373478 | 11791087 | tier1 | NA | 6549 | NA | 0 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | MAPKAPK5|ALDH2 | MAPKAPK5 | ALDH2 | 12 | 12 | 1 | 1 | 44 | 21 | 18 | 0.052 | 112280573 | 112241663 | tier1 | Out-of-frame | 9968 | NA | 0.38184 |
| LUAD | TCGA-86-8054-01A | TCGA-86-8054 | MAPKAPK5|ALDH2 | MAPKAPK5 | ALDH2 | 12 | 12 | 1 | 1 | 2 | 6 | 6 | 0.052 | 112280573 | 112237710 | tier3 | In-frame | 9967 | NA | 0.38184 |
| BRCA | TCGA-BH-A18H-01A | TCGA-BH-A18H | MAPKAPK5|GNPTAB | MAPKAPK5 | GNPTAB | 12 | 12 | 1 | -1 | 9 | 2 | 2 | 0.15 | 112304035 | 102183835 | tier1 | Out-of-frame | 9970 | NA | 0.37858 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | MAPKAPK5|CCDC38 | MAPKAPK5 | CCDC38 | 12 | 12 | 1 | -1 | 83 | 79 | 77 | 2.8 | 112280573 | 96266238 | tier1 | In-frame | 9969 | NA | 0.37907 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | MAPKAPK5|UNC119B | MAPKAPK5 | UNC119B | 12 | 12 | 1 | 1 | 7 | 6 | 4 | 0.4 | 112326422 | 121157723 | tier1 | Out-of-frame | 9971 | NA | 0.37948 |
| KIRC | TCGA-A3-3328-01A | TCGA-A3-3328 | SLC23A2|TMX4 | SLC23A2 | TMX4 | 20 | 20 | -1 | -1 | 16 | 11 | 9 | 1.5 | 4951439 | 7982188 | tier1 | 5UTR-CDS | 16080 | NA | 0 |
| COAD | TCGA-DM-A1HA-01A | TCGA-DM-A1HA | SLC23A2|CDS2 | SLC23A2 | CDS2 | 20 | 20 | -1 | 1 | 5 | 1 | 1 | 0.19 | 4982052 | 5163033 | tier2 | 5UTR-CDS | 16078 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SLC23A2|PHKB | SLC23A2 | PHKB | 20 | 16 | -1 | 1 | 5 | 7 | 7 | 1.4 | 4864288 | 47674946 | tier1 | Out-of-frame | 16079 | non-validated | 0 |
| PRAD | TCGA-HC-8266-01A | TCGA-HC-8266 | KDM2B|SLC9A5 | KDM2B | SLC9A5 | 12 | 16 | -1 | 1 | 7 | 7 | 7 | 0.2 | 122012452 | 67304641 | tier1 | In-frame | 8652 | NA | 0.34801 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | KDM2B|KSR2 | KDM2B | KSR2 | 12 | 12 | -1 | -1 | 7 | 36 | 32 | 0.92 | 121986782 | 118298236 | tier1 | Out-of-frame | 8648 | NA | 0.36506 |
| SARC | TCGA-IS-A3K7-01A | TCGA-IS-A3K7 | KDM2B|CORO1C | KDM2B | CORO1C | 12 | 12 | -1 | -1 | 4 | 3 | 3 | 2.6 | 121877660 | 109095099 | tier1 | CDS-5UTR | 8647 | non-validated | 0.35417 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | KDM2B|LRRIQ1 | KDM2B | LRRIQ1 | 12 | 12 | -1 | 1 | 18 | 31 | 29 | 1 | 122012452 | 85638567 | tier1 | Out-of-frame | 8649 | non-validated | 0.3441 |
| TGCT | TCGA-2G-AAL5-01A | TCGA-2G-AAL5 | KDM2B|ORAI1 | KDM2B | ORAI1 | 12 | 12 | -1 | 1 | 4 | 4 | 3 | 0.033 | 122012452 | 122078947 | tier1 | Out-of-frame | 8650 | NA | 0.33297 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | KDM2B|RHOF | KDM2B | RHOF | 12 | 12 | -1 | -1 | 36 | 33 | 27 | 0.16 | 121932382 | 122231145 | tier1 | In-frame | 8651 | NA | 0.35089 |
| BRCA | TCGA-AR-A1AU-01A | TCGA-AR-A1AU | TASP1|HLCS | TASP1 | HLCS | 20 | 21 | -1 | -1 | 8 | 4 | 2 | 0.004 | 13539655 | 38334470 | tier1 | CDS-5UTR | 17423 | NA | 0 |
| CESC | TCGA-C5-A1MK-01A | TCGA-C5-A1MK | TASP1|DHCR7 | TASP1 | DHCR7 | 20 | 11 | -1 | -1 | 12 | 11 | 6 | 2.7 | 13415691 | 71152486 | tier1 | In-frame | 17421 | NA | 0 |
| LUAD | TCGA-97-7937-01A | TCGA-97-7937 | TASP1|SLC24A3 | TASP1 | SLC24A3 | 20 | 20 | -1 | 1 | 2 | 4 | 4 | 0.33 | 13398095 | 19646508 | tier4 | In-frame | 17427 | NA | 0 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | TASP1|RALGAPA2 | TASP1 | RALGAPA2 | 20 | 20 | -1 | -1 | 3 | 3 | 3 | 0.73 | 13604093 | 20634231 | tier1 | In-frame | 17425 | NA | 0 |
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