TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
HNSC	TCGA-CQ-6224-01A	TCGA-CQ-6224	GNAS\|TSPAN7	GNAS	TSPAN7	20	X	1	1	2	3	3	3.1	57486241	38505515	tier3	3UTR-CDS	7206	NA	0.37253
THCA	TCGA-ET-A25P-01A	TCGA-ET-A25P	GNAS\|THSD4	GNAS	THSD4	20	15	1	1	2	3	1	0.1	57486241	72072881	tier3	3UTR-CDS	7205	NA	0.37286
ACC	TCGA-OR-A5JG-01A	TCGA-OR-A5JG	GNAS\|PSAP	GNAS	PSAP	20	10	1	-1	2	28	1	1.3	57486241	73579657	tier4	3UTR-CDS	7197	NA	0.3743
CESC	TCGA-JX-A3PZ-01A	TCGA-JX-A3PZ	GNAS\|SNW1	GNAS	SNW1	20	14	1	-1	2	72	17	0.99	57486241	78189203	tier3	3UTR-CDS	7202	NA	0.37789
HNSC	TCGA-CN-6010-01A	TCGA-CN-6010	GNAS\|EEA1	GNAS	EEA1	20	12	1	-1	2	57	8	0.37	57486241	93229203	tier3	NA	7187	NA	0.3825
HNSC	TCGA-H7-7774-01A	TCGA-H7-7774	GNAS\|SMAP2	GNAS	SMAP2	20	1	1	1	2	54	21	1.4	57486241	40878688	tier4	3UTR-CDS	7201	NA	0.37205
KICH	TCGA-KN-8423-01A	TCGA-KN-8423	GNAS\|ARFGEF2	GNAS	ARFGEF2	20	20	1	1	2	47	33	4.1	57486241	47615777	tier4	3UTR-CDS	7181	NA	0.37779
KICH	TCGA-KN-8435-01A	TCGA-KN-8435	GNAS\|CLIP1	GNAS	CLIP1	20	12	1	-1	2	76	12	0.78	57486241	122819252	tier4	3UTR-CDS	7186	non-validated	0.37643
KICH	TCGA-KM-8442-01A	TCGA-KM-8442	GNAS\|FOXP1	GNAS	FOXP1	20	3	1	-1	2	57	44	3.3	57486241	71007472	tier3	NA	7191	non-validated	0.37906
KIRP	TCGA-DW-7836-01A	TCGA-DW-7836	GNAS\|AP1G2	GNAS	AP1G2	20	14	1	-1	2	98	57	0.036	57486247	24037279	tier3	3UTR-5UTR	7180	NA	0.37565
LGG	TCGA-CS-6668-01A	TCGA-CS-6668	GNAS\|BIRC6	GNAS	BIRC6	20	2	1	1	2	17	12	2.1	57486241	32820101	tier4	3UTR-CDS	7183	non-validated	0.3819
LGG	TCGA-CS-5395-01A	TCGA-CS-5395	GNAS\|ZNFX1	GNAS	ZNFX1	20	20	1	-1	2	12	9	3.4	57486241	47863418	tier4	3UTR-CDS	7208	non-validated	0.37375
LIHC	TCGA-CC-A5UD-01A	TCGA-CC-A5UD	GNAS\|BIRC6	GNAS	BIRC6	20	2	1	1	2	58	29	2.1	57486247	32820101	tier3	3UTR-CDS	7182	NA	0.3819
THCA	TCGA-DE-A2OL-01A	TCGA-DE-A2OL	GNAS\|CLIP1	GNAS	CLIP1	20	12	1	-1	2	8	7	0.78	57486241	122819252	tier3	3UTR-CDS	7185	non-validated	0.37643
THCA	TCGA-IM-A3EB-01A	TCGA-IM-A3EB	GNAS\|ELK3	GNAS	ELK3	20	12	1	1	2	36	31	0.046	57486247	96588323	tier3	3UTR-5UTR	7189	NA	0.38392
THCA	TCGA-DJ-A13S-01A	TCGA-DJ-A13S	GNAS\|HEG1	GNAS	HEG1	20	3	1	-1	2	7	7	0.35	57486241	124692749	tier3	3UTR-CDS	7193	NA	0.3744
THCA	TCGA-H2-A2K9-01A	TCGA-H2-A2K9	GNAS\|HEG1	GNAS	HEG1	20	3	1	-1	2	9	8	0.35	57486241	124692749	tier3	3UTR-CDS	7194	NA	0.3744
THCA	TCGA-EM-A3OB-01A	TCGA-EM-A3OB	GNAS\|SEC63	GNAS	SEC63	20	6	1	-1	2	186	120	0.85	57486241	108214782	tier4	NA	7198	NA	0.3749
THCA	TCGA-J8-A3YD-01A	TCGA-J8-A3YD	GNAS\|ZNFX1	GNAS	ZNFX1	20	20	1	-1	2	44	37	3.4	57486247	47863418	tier4	3UTR-CDS	7209	NA	0.37375
THYM	TCGA-XU-A92U-01A	TCGA-XU-A92U	GNAS\|FOXP1	GNAS	FOXP1	20	3	1	-1	2	104	27	3.3	57486241	71007472	tier4	NA	7192	NA	0.37906

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