Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-BP-4798-01A | TCGA-BP-4798 | NLK|KALRN | NLK | KALRN | 17 | 3 | 1 | 1 | 4 | 7 | 7 | 0.13 | 26512291 | 124281690 | tier1 | In-frame | 11602 | NA | 0.37865 |
| BRCA | TCGA-EW-A6S9-01A | TCGA-EW-A6S9 | NLK|DUSP14 | NLK | DUSP14 | 17 | 17 | 1 | 1 | 4 | 1 | 1 | 0.78 | 26370357 | 35870779 | tier3 | CDS-5UTR | 11600 | NA | 0.37808 |
| BLCA | TCGA-ZF-A9RM-01A | TCGA-ZF-A9RM | NLK|SMURF2 | NLK | SMURF2 | 17 | 17 | 1 | -1 | 2 | 1 | 1 | 0.16 | 26370357 | 62542456 | tier3 | Out-of-frame | 11606 | NA | 0.38402 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | NLK|BCAS3 | NLK | BCAS3 | 17 | 17 | 1 | 1 | 12 | 32 | 24 | 0.52 | 26495683 | 59067332 | tier1 | In-frame | 11598 | NA | 0.3749 |
| BRCA | TCGA-3C-AALJ-01A | TCGA-3C-AALJ | NLK|DOK5 | NLK | DOK5 | 17 | 20 | 1 | 1 | 3 | 2 | 2 | 0.28 | 26495683 | 53171472 | tier1 | In-frame | 11599 | NA | 0.38286 |
| HNSC | TCGA-CV-5434-01A | TCGA-CV-5434 | NLK|RAD51D | NLK | RAD51D | 17 | 17 | 1 | -1 | 8 | 3 | 2 | 0.35 | 26370357 | 33433500 | tier1 | Out-of-frame | 11605 | NA | 0.36957 |
| LGG | TCGA-FG-A70Z-01A | TCGA-FG-A70Z | NLK|ELMO1 | NLK | ELMO1 | 17 | 7 | 1 | -1 | 2 | 2 | 2 | 0.58 | 26449758 | 37172839 | tier3 | In-frame | 11601 | NA | 0.37982 |
| LUAD | TCGA-69-7764-01A | TCGA-69-7764 | NLK|NF1 | NLK | NF1 | 17 | 17 | 1 | 1 | 20 | 14 | 11 | 0.042 | 26370357 | 29687505 | tier1 | Out-of-frame | 11604 | NA | 0.3834 |
| BRCA | TCGA-C8-A26V-01A | TCGA-C8-A26V | TXNDC16|GPR137C | TXNDC16 | GPR137C | 14 | 14 | -1 | 1 | 13 | 13 | 4 | 0.63 | 52936755 | 53098878 | tier1 | Out-of-frame | 18987 | NA | 0 |
| PRAD | TCGA-HC-7233-01A | TCGA-HC-7233 | TXNDC16|ARG2 | TXNDC16 | ARG2 | 14 | 14 | -1 | 1 | 26 | 19 | 18 | 0.33 | 53009089 | 68108903 | tier1 | Out-of-frame | 18986 | validated | 0 |
| PCPG | TCGA-QT-A5XJ-01A | TCGA-QT-A5XJ | GNAS|EIF2AK2 | GNAS | EIF2AK2 | 20 | 2 | 1 | -1 | 2 | 297 | 24 | 0.38 | 57486241 | 37342384 | tier4 | NA | 7188 | NA | 0.392 |
| BLCA | TCGA-FD-A3SL-01A | TCGA-FD-A3SL | GNAS|SUPT16H | GNAS | SUPT16H | 20 | 14 | 1 | -1 | 3 | 52 | 14 | 0.62 | 57486241 | 21829491 | tier1 | 3UTR-CDS | 7204 | NA | 0.38489 |
| LUSC | TCGA-85-8664-01A | TCGA-85-8664 | GNAS|SUPT16H | GNAS | SUPT16H | 20 | 14 | 1 | -1 | 2 | 63 | 14 | 0.62 | 57486241 | 21829491 | tier3 | 3UTR-CDS | 7203 | NA | 0.38489 |
| THCA | TCGA-ET-A25I-01A | TCGA-ET-A25I | GNAS|CLCN3 | GNAS | CLCN3 | 20 | 4 | 1 | 1 | 2 | 262 | 8 | 3.1 | 57486241 | 170623929 | tier3 | NA | 7184 | NA | 0.37773 |
| THCA | TCGA-BJ-A192-01A | TCGA-BJ-A192 | GNAS|SIAE | GNAS | SIAE | 20 | 11 | 1 | -1 | 2 | 100 | 9 | 0.21 | 57486241 | 124543777 | tier3 | 3UTR-5UTR | 7199 | NA | 0.37115 |
| THCA | TCGA-ET-A3BQ-01B | TCGA-ET-A3BQ | GNAS|SIAE | GNAS | SIAE | 20 | 11 | 1 | -1 | 2 | 26 | 3 | 0.21 | 57486241 | 124543777 | tier3 | 3UTR-5UTR | 7200 | NA | 0.37115 |
| PRAD | TCGA-G9-6496-01A | TCGA-G9-6496 | GNAS|FN1 | GNAS | FN1 | 20 | 2 | 1 | -1 | 2 | 7 | 5 | 1.2 | 57486247 | 216274837 | tier3 | 3UTR-CDS | 7190 | NA | 0.38119 |
| PCPG | TCGA-RW-A686-06A | TCGA-RW-A686 | GNAS|PLXNC1 | GNAS | PLXNC1 | 20 | 12 | 1 | 1 | 2 | 14 | 12 | 0.97 | 57486241 | 94642003 | tier3 | 3UTR-CDS | 7196 | NA | 0.377 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | GNAS|ITGAV | GNAS | ITGAV | 20 | 2 | 1 | 1 | 2 | 21 | 5 | 3.2 | 57486241 | 187540547 | tier4 | 3UTR-CDS | 7195 | NA | 0.3829 |
| ACC | TCGA-OR-A5JK-01A | TCGA-OR-A5JK | GNAS|TSPAN7 | GNAS | TSPAN7 | 20 | X | 1 | 1 | 2 | 56 | 7 | 3.1 | 57486241 | 38505515 | tier3 | 3UTR-CDS | 7207 | NA | 0.37253 |
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