TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LIHC	TCGA-ZS-A9CF-01A	TCGA-ZS-A9CF	EIF2AK1\|GCK	EIF2AK1	GCK	7	7	-1	-1	41	29	29	0.43	6094177	44189663	tier4	Out-of-frame	5417	NA	0.37145
PRAD	TCGA-V1-A8WV-01A	TCGA-V1-A8WV	EIF2AK1\|MAP2K5	EIF2AK1	MAP2K5	7	15	-1	1	14	30	24	1.3	6077055	68098984	tier1	In-frame	5420	NA	0.39217
LGG	TCGA-E1-A7Z2-01A	TCGA-E1-A7Z2	EIF2AK1\|GLCCI1	EIF2AK1	GLCCI1	7	7	-1	1	4	3	2	0.75	6064340	8124527	tier1	Out-of-frame	5419	NA	0.3715
BRCA	TCGA-BH-A18V-01A	TCGA-BH-A18V	ITPKC\|LTBP4	ITPKC	LTBP4	19	19	1	1	9	10	10	0.051	41231344	41110941	tier1	In-frame	8442	NA	0.36503
PAAD	TCGA-RB-AA9M-01A	TCGA-RB-AA9M	ITPKC\|LTBP4	ITPKC	LTBP4	19	19	1	1	15	6	6	0.051	41231344	41110941	tier1	In-frame	8445	NA	0.36503
UCS	TCGA-N8-A4PL-01A	TCGA-N8-A4PL	ITPKC\|LTBP4	ITPKC	LTBP4	19	19	1	1	46	24	22	0.051	41231344	41110941	tier1	In-frame	8444	NA	0.36503
BRCA	TCGA-BH-A18V-06A	TCGA-BH-A18V	ITPKC\|SPTBN4	ITPKC	SPTBN4	19	19	1	1	5	5	4	0.3	41231344	41071329	tier1	Out-of-frame	8446	NA	0.36463
PAAD	TCGA-RB-AA9M-01A	TCGA-RB-AA9M	ITPKC\|SPTBN4	ITPKC	SPTBN4	19	19	1	1	6	3	2	0.3	41231344	41071329	tier1	Out-of-frame	8447	NA	0.36463
LUAD	TCGA-55-6984-01A	TCGA-55-6984	CEACAM6\|SIAE	CEACAM6	SIAE	19	11	1	-1	2	74	61	0.54	42276113	124543777	tier3	3UTR-5UTR	3488	non-validated	0.35949
LUAD	TCGA-71-6725-01A	TCGA-71-6725	CEACAM6\|DDX27	CEACAM6	DDX27	19	20	1	1	2	247	189	0.88	42276113	47849303	tier3	NA	3487	NA	0.36962
LUAD	TCGA-49-4501-01A	TCGA-49-4501	CEACAM6\|ZNFX1	CEACAM6	ZNFX1	19	20	1	-1	2	58	54	0.71	42276113	47863418	tier4	3UTR-CDS	3489	NA	0.36304
READ	TCGA-AH-6549-01A	TCGA-AH-6549	CEACAM6\|CCT5	CEACAM6	CCT5	19	5	1	1	2	80	70	1.2	42276113	10250033	tier3	3UTR-5UTR	3486	NA	0.37485
BRCA	TCGA-BH-A18V-01A	TCGA-BH-A18V	MTMR2\|MAML2	MTMR2	MAML2	11	11	-1	-1	11	4	3	0.008	95657039	95724887	tier1	Out-of-frame	10817	NA	0.3557
BRCA	TCGA-E9-A244-01A	TCGA-E9-A244	MTMR2\|MAML2	MTMR2	MAML2	11	11	-1	-1	11	6	6	0.008	95598765	95724887	tier1	Out-of-frame	10818	NA	0.3557
LGG	TCGA-HT-7477-01B	TCGA-HT-7477	MTMR2\|MAML2	MTMR2	MAML2	11	11	-1	-1	22	3	3	0.008	95621320	95826681	tier1	In-frame	10819	NA	0.3557
PRAD	TCGA-ZG-A9L0-01A	TCGA-ZG-A9L0	MTMR2\|TCP11L1	MTMR2	TCP11L1	11	11	-1	1	16	5	5	0.14	95647406	33094020	tier1	5UTR-CDS	10820	NA	0.34419
ACC	TCGA-OR-A5J7-01A	TCGA-OR-A5J7	HSD17B14\|PLEKHA4	HSD17B14	PLEKHA4	19	19	-1	-1	139	64	55	0.011	49335923	49344567	tier1	Out-of-frame	7976	NA	0.36364
BRCA	TCGA-EW-A2FS-01A	TCGA-EW-A2FS	BAX\|DHDH	BAX	DHDH	19	19	1	1	9	7	6	0.18	49459590	49438257	tier1	In-frame	1929	NA	0.36851
LIHC	TCGA-DD-A73A-01A	TCGA-DD-A73A	BAX\|VAV2	BAX	VAV2	19	9	1	-1	10	7	4	0.86	49464171	136629231	tier1	In-frame	1930	NA	0.3869
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	NLK\|KSR1	NLK	KSR1	17	17	1	1	2	14	13	0.92	26512291	25904518	tier2	CDS-5UTR	11603	NA	0.3735

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