Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A1RB-01A | TCGA-E9-A1RB | MAST2|MMEL1 | MAST2 | MMEL1 | 1 | 1 | 1 | -1 | 7 | 4 | 4 | 0.59 | 46493535 | 2543643 | tier1 | Out-of-frame | 10021 | NA | 0.38223 |
| OV | TCGA-23-1107-01A | TCGA-23-1107 | MAST2|PSMA5 | MAST2 | PSMA5 | 1 | 1 | 1 | -1 | 2 | 18 | 15 | 0.2 | 46348067 | 109944712 | tier2 | Out-of-frame | 10025 | NA | 0.38398 |
| PCPG | TCGA-QR-A6H2-01A | TCGA-QR-A6H2 | MAST2|OMA1 | MAST2 | OMA1 | 1 | 1 | 1 | -1 | 8 | 7 | 6 | 0.43 | 46425149 | 58946846 | tier2 | Out-of-frame | 10024 | NA | 0.38194 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | MAST2|TM4SF1 | MAST2 | TM4SF1 | 1 | 3 | 1 | -1 | 3 | 4 | 3 | 0.64 | 46295253 | 149093556 | tier1 | In-frame | 10027 | non-validated | 0.38211 |
| BRCA | TCGA-A2-A4RW-01A | TCGA-A2-A4RW | MAST2|C6orf52 | MAST2 | C6orf52 | 1 | 6 | 1 | -1 | 19 | 16 | 15 | 0.48 | 46425149 | 10683465 | tier1 | Out-of-frame | 10017 | NA | 0 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | MAST2|NASP | MAST2 | NASP | 1 | 1 | 1 | 1 | 9 | 4 | 4 | 0.66 | 46348067 | 46056895 | tier1 | In-frame | 10022 | NA | 0.38556 |
| COAD | TCGA-AD-6890-01A | TCGA-AD-6890 | MAST2|C1orf228 | MAST2 | C1orf228 | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 0.03 | 46348067 | 45189794 | tier1 | Out-of-frame | 10016 | NA | 0 |
| DLBC | TCGA-FA-A6HN-01A | TCGA-FA-A6HN | MAST2|NASP | MAST2 | NASP | 1 | 1 | 1 | 1 | 16 | 11 | 11 | 0.66 | 46348067 | 46056895 | tier1 | In-frame | 10023 | NA | 0.38556 |
| OV | TCGA-13-0801-01A | TCGA-13-0801 | MAST2|CLDN14 | MAST2 | CLDN14 | 1 | 21 | 1 | -1 | 3 | 11 | 9 | 1.4 | 46295253 | 37834074 | tier1 | CDS-5UTR | 10018 | NA | 0.38128 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | MAST2|MMACHC | MAST2 | MMACHC | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 0.17 | 46425149 | 45973028 | tier2 | Out-of-frame | 10020 | NA | 0.38124 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | DNAJA1|GALNTL6 | DNAJA1 | GALNTL6 | 9 | 4 | 1 | 1 | 2 | 4 | 2 | 0.095 | 33030665 | 173930329 | tier2 | Out-of-frame | 4924 | NA | 0.37444 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | B4GALT1|KIAA1045 | B4GALT1 | KIAA1045 | 9 | 9 | -1 | 1 | 4 | 8 | 8 | 3 | 33120417 | 34971292 | tier1 | CDS-5UTR | 1871 | NA | 0.36123 |
| BRCA | TCGA-LL-A9Q3-01A | TCGA-LL-A9Q3 | B4GALT1|AQP7 | B4GALT1 | AQP7 | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 0.071 | 33166756 | 33386539 | tier4 | In-frame | 1865 | NA | 0.36108 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | B4GALT1|FAM201A | B4GALT1 | FAM201A | 9 | 9 | -1 | 1 | 39 | 6 | 4 | 0.012 | 33135187 | 38621829 | tier1 | Out-of-frame | 1870 | NA | 0.35882 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | B4GALT1|NFX1 | B4GALT1 | NFX1 | 9 | 9 | -1 | 1 | 39 | 12 | 12 | 2.4 | 33135187 | 33354084 | tier1 | Out-of-frame | 1872 | NA | 0.37285 |
| CESC | TCGA-EA-A1QS-01A | TCGA-EA-A1QS | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 210 | 139 | 130 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1868 | NA | 0.37586 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 36 | 17 | 17 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1867 | NA | 0.37586 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 46 | 27 | 26 | 0.17 | 33166756 | 33262828 | tier4 | In-frame | 1866 | NA | 0.37586 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 14 | 6 | 5 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1869 | NA | 0.37586 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | EIF2AK1|PHF14 | EIF2AK1 | PHF14 | 7 | 7 | -1 | 1 | 18 | 19 | 17 | 0.68 | 6094177 | 11091239 | tier1 | In-frame | 5421 | NA | 0.37374 |
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