Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-43-A474-01A | TCGA-43-A474 | MECOM|ARMC8 | MECOM | ARMC8 | 3 | 3 | -1 | 1 | 4 | 6 | 5 | 0.007 | 169098975 | 138007890 | tier1 | In-frame | 10136 | NA | 0.33929 |
| OV | TCGA-10-0934-01A | TCGA-10-0934 | MECOM|LMAN2L | MECOM | LMAN2L | 3 | 2 | -1 | -1 | 6 | 3 | 3 | 0.49 | 169381124 | 97400263 | tier1 | Out-of-frame | 10139 | non-validated | 0.32571 |
| STAD | TCGA-BR-4191-01A | TCGA-BR-4191 | MECOM|ANKRD10 | MECOM | ANKRD10 | 3 | 13 | -1 | -1 | 2 | 6 | 6 | 0.53 | 168849217 | 111536140 | tier3 | In-frame | 10135 | NA | 0.34757 |
| STAD | TCGA-VQ-A8DT-01A | TCGA-VQ-A8DT | MECOM|LRRC34 | MECOM | LRRC34 | 3 | 3 | -1 | -1 | 2 | 14 | 12 | 0.39 | 169098975 | 169521969 | tier2 | In-frame | 10141 | NA | 0.33047 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | MECOM|AC022431.2 | MECOM | AC022431.2 | 3 | 5 | -1 | -1 | 2 | 3 | 3 | 1.9 | 169381124 | 55831055 | tier2 | Out-of-frame | 10134 | NA | 0 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | MECOM|LRRC34 | MECOM | LRRC34 | 3 | 3 | -1 | -1 | 5 | 6 | 5 | 0.39 | 169381124 | 169526533 | tier1 | CDS-5UTR | 10140 | NA | 0.33047 |
| HNSC | TCGA-MT-A7BN-01A | TCGA-MT-A7BN | PREP|PTPRK | PREP | PTPRK | 6 | 6 | -1 | -1 | 6 | 2 | 1 | 0.18 | 105729621 | 128643455 | tier2 | Out-of-frame | 13512 | NA | 0.37077 |
| BRCA | TCGA-C8-A137-01A | TCGA-C8-A137 | PREP|AIM1 | PREP | AIM1 | 6 | 6 | -1 | 1 | 25 | 53 | 44 | 3 | 105729621 | 107003643 | tier1 | In-frame | 13507 | NA | 0.33843 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | PREP|C18orf1 | PREP | C18orf1 | 6 | 18 | -1 | 1 | 9 | 12 | 12 | 3.2 | 105845728 | 13621116 | tier1 | Out-of-frame | 13509 | NA | 0 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | PREP|DCBLD1 | PREP | DCBLD1 | 6 | 6 | -1 | 1 | 20 | 14 | 12 | 0.031 | 105771540 | 117824930 | tier1 | Out-of-frame | 13510 | NA | 0.34696 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | PREP|PLN | PREP | PLN | 6 | 6 | -1 | 1 | 22 | 11 | 11 | 0.72 | 105845728 | 118879988 | tier1 | CDS-5UTR | 13511 | non-validated | 0.35591 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | PREP|ATG5 | PREP | ATG5 | 6 | 6 | -1 | -1 | 5 | 1 | 1 | 1.2 | 105816778 | 106696119 | tier3 | Out-of-frame | 13508 | NA | 0.34569 |
| BRCA | TCGA-AR-A2LL-01A | TCGA-AR-A2LL | SLC25A24|DHRS12 | SLC25A24 | DHRS12 | 1 | 13 | -1 | -1 | 18 | 22 | 22 | 0.83 | 108724563 | 52373803 | tier1 | CDS-5UTR | 16100 | NA | 0 |
| BRCA | TCGA-AR-A251-01A | TCGA-AR-A251 | MAP3K4|FNDC1 | MAP3K4 | FNDC1 | 6 | 6 | 1 | 1 | 40 | 42 | 36 | 1.3 | 161471011 | 159618463 | tier1 | Out-of-frame | 9871 | NA | 0.38398 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | MAP3K4|C6orf186 | MAP3K4 | C6orf186 | 6 | 6 | 1 | -1 | 25 | 19 | 15 | 0.22 | 161471011 | 110636684 | tier1 | In-frame | 9870 | NA | 0 |
| LUSC | TCGA-NK-A5CR-01A | TCGA-NK-A5CR | MAP3K4|FRMD1 | MAP3K4 | FRMD1 | 6 | 6 | 1 | -1 | 2 | 2 | 2 | 0.6 | 161413115 | 168479704 | tier3 | NA | 9872 | NA | 0.38325 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | MAP3K4|XAF1 | MAP3K4 | XAF1 | 6 | 17 | 1 | 1 | 4 | 3 | 3 | 2.5 | 161502070 | 6673962 | tier1 | Out-of-frame | 9873 | validated | 0.38368 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | WNT11|TSPAN8 | WNT11 | TSPAN8 | 11 | 12 | -1 | -1 | 11 | 14 | 13 | 0.36 | 75917369 | 71551567 | tier4 | CDS-5UTR | 19899 | NA | 0 |
| PRAD | TCGA-FC-A5OB-01A | TCGA-FC-A5OB | MAST2|COQ6 | MAST2 | COQ6 | 1 | 14 | 1 | 1 | 2 | 5 | 5 | 1.5 | 46474043 | 74425674 | tier3 | In-frame | 10019 | NA | 0.38322 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | MAST2|ST3GAL3 | MAST2 | ST3GAL3 | 1 | 1 | 1 | 1 | 22 | 16 | 15 | 0.5 | 46348067 | 44365213 | tier1 | In-frame | 10026 | NA | 0.38263 |
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