TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
KICH	TCGA-KL-8325-01A	TCGA-KL-8325	APLP2\|C7	APLP2	C7	11	5	1	1	2	24	19	0.56	130014699	40954982	tier4	NA	1122	non-validated	0.3763
KICH	TCGA-KO-8403-01A	TCGA-KO-8403	APLP2\|C7	APLP2	C7	11	5	1	1	2	155	133	0.56	130014699	40954982	tier3	NA	1123	NA	0.3763
THCA	TCGA-DJ-A3V9-01A	TCGA-DJ-A3V9	APLP2\|C7	APLP2	C7	11	5	1	1	2	291	238	0.56	130014699	40954982	tier3	NA	1121	NA	0.3763
BRCA	TCGA-AN-A0FS-01A	TCGA-AN-A0FS	APLP2\|KCNJ5	APLP2	KCNJ5	11	11	1	1	13	27	21	0.79	129939977	128781159	tier1	CDS-5UTR	1128	NA	0.37273
KIRC	TCGA-A3-3319-01A	TCGA-A3-3319	APLP2\|PLEKHA5	APLP2	PLEKHA5	11	12	1	1	2	36	32	0.86	130014699	19441012	tier2	NA	1130	NA	0.37446
THCA	TCGA-BJ-A45I-01A	TCGA-BJ-A45I	APLP2\|EEA1	APLP2	EEA1	11	12	1	-1	2	117	85	0.38	130014699	93229203	tier3	NA	1125	NA	0.37909
BRCA	TCGA-AR-A2LR-01A	TCGA-AR-A2LR	COL16A1\|ATF7IP	COL16A1	ATF7IP	1	12	-1	1	7	4	4	0.99	32130773	14576843	tier1	CDS-5UTR	3995	NA	0.36592
HNSC	TCGA-KU-A6H7-01A	TCGA-KU-A6H7	COL16A1\|CPSF6	COL16A1	CPSF6	1	12	-1	1	81	42	40	0.003	32119200	69663292	tier1	CDS-3UTR	3996	NA	0.36481
SKCM	TCGA-D3-A3CF-06A	TCGA-D3-A3CF	NCOA1\|ALK	NCOA1	ALK	2	2	1	-1	5	3	1	0.47	24985645	29940563	tier2	Out-of-frame	11179	NA	0.38685
BRCA	TCGA-OL-A5RW-01A	TCGA-OL-A5RW	NCOA1\|GOLGB1	NCOA1	GOLGB1	2	3	1	-1	46	40	38	0.24	24896332	121388202	tier1	In-frame	11180	NA	0.37362
BRCA	TCGA-BH-A0B3-01A	TCGA-BH-A0B3	NCOA1\|PSD2	NCOA1	PSD2	2	5	1	1	4	3	3	0.34	24787299	139201478	tier1	5UTR-CDS	11182	non-validated	0.3759
KIRP	TCGA-G7-6792-01A	TCGA-G7-6792	NCOA1\|LPIN1	NCOA1	LPIN1	2	2	1	1	10	1	1	0.033	24807429	11881475	tier3	5UTR-5UTR	11181	NA	0.37336
LUSC	TCGA-85-A4JB-01A	TCGA-85-A4JB	NCOA1\|UBXN2A	NCOA1	UBXN2A	2	2	1	1	2	2	2	0.13	24807429	24181171	tier3	5UTR-5UTR	11183	NA	0.37585
SKCM	TCGA-D3-A1Q6-06A	TCGA-D3-A1Q6	NCOA1\|UBXN2A	NCOA1	UBXN2A	2	2	1	1	2	4	4	0.13	24920667	24222542	tier3	Out-of-frame	11184	NA	0.37585
BRCA	TCGA-A7-A13D-01B	TCGA-A7-A13D	CD59\|FBXO3	CD59	FBXO3	11	11	-1	-1	14	23	22	0.041	33731752	33780147	tier1	In-frame	3282	validated	0.36801
UCEC	TCGA-A5-A7WK-01A	TCGA-A5-A7WK	MECOM\|SLC7A14	MECOM	SLC7A14	3	3	-1	-1	37	39	35	1	169381124	170219134	tier1	In-frame	10144	NA	0.33094
SARC	TCGA-DX-A3UA-01A	TCGA-DX-A3UA	MECOM\|CD86	MECOM	CD86	3	3	-1	1	4	3	3	0.55	169381124	121810448	tier1	Out-of-frame	10137	NA	0.36225
UCS	TCGA-N9-A4Q8-01A	TCGA-N9-A4Q8	MECOM\|NCEH1	MECOM	NCEH1	3	3	-1	-1	17	12	11	0.96	169381124	172363482	tier1	In-frame	10142	NA	0
LAML	TCGA-AB-2944-03A	TCGA-AB-2944	MECOM\|RPN1	MECOM	RPN1	3	3	-1	-1	13	27	27	0.47	169381124	128363826	tier1	Out-of-frame	10143	NA	0.34604
LUAD	TCGA-91-7771-01A	TCGA-91-7771	MECOM\|FRMD5	MECOM	FRMD5	3	15	-1	-1	5	4	4	1	168810746	44180464	tier1	Out-of-frame	10138	NA	0.34959

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