Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | SRP68|CDK3 | SRP68 | CDK3 | 17 | 17 | -1 | 1 | 21 | 12 | 12 | 0.49 | 74042119 | 74001379 | tier1 | In-frame | 16857 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | ACTB|SEPP1 | ACTB | SEPP1 | 7 | 5 | -1 | -1 | 2 | 1 | 1 | 1.9 | 5567255 | 42811994 | tier4 | 3UTR-5UTR | 349 | NA | 0.37488 |
| BRCA | TCGA-D8-A1JP-01A | TCGA-D8-A1JP | TATDN1|OC90 | TATDN1 | OC90 | 8 | 8 | -1 | -1 | 7 | 6 | 6 | 0.019 | 125527987 | 133058130 | tier1 | Out-of-frame | 17428 | NA | 0 |
| LUAD | TCGA-05-4422-01A | TCGA-05-4422 | EXT1|OC90 | EXT1 | OC90 | 8 | 8 | -1 | -1 | 13 | 4 | 2 | 1.9 | 118830674 | 133045411 | tier1 | Out-of-frame | 5926 | validated | 0.35647 |
| LUAD | TCGA-62-A46S-01A | TCGA-62-A46S | TMEM64|OC90 | TMEM64 | OC90 | 8 | 8 | -1 | -1 | 22 | 8 | 8 | 1.1 | 91657339 | 133058130 | tier1 | Out-of-frame | 18048 | NA | 0 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | KCMF1|PRKDC | KCMF1 | PRKDC | 2 | 8 | 1 | -1 | 48 | 24 | 23 | 0.04 | 85255179 | 48772320 | tier1 | In-frame | 8563 | NA | 0.38019 |
| OV | TCGA-25-1329-01A | TCGA-25-1329 | MCM5|LYN | MCM5 | LYN | 22 | 8 | 1 | 1 | 9 | 12 | 12 | 0.98 | 35799535 | 56910905 | tier1 | In-frame | 10099 | NA | 0.3922 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | SHB|LYN | SHB | LYN | 9 | 8 | -1 | 1 | 2 | 36 | 35 | 1 | 37974619 | 56854414 | tier3 | CDS-5UTR | 15872 | NA | 0 |
| LUAD | TCGA-55-8620-01A | TCGA-55-8620 | MED25|SIGLEC12 | MED25 | SIGLEC12 | 19 | 19 | 1 | -1 | 46 | 38 | 32 | 0.072 | 50322553 | 51995083 | tier1 | Out-of-frame | 10223 | NA | 0.36868 |
| BLCA | TCGA-FD-A62S-01A | TCGA-FD-A62S | ODZ4|DPP3 | ODZ4 | DPP3 | 11 | 11 | -1 | 1 | 3 | 4 | 4 | 1.5 | 79151553 | 66272083 | tier1 | 5UTR-CDS | 12010 | NA | 0.35722 |
| BLCA | TCGA-FD-A62S-01A | TCGA-FD-A62S | RAB30|DPP3 | RAB30 | DPP3 | 11 | 11 | -1 | 1 | 18 | 7 | 7 | 3.8 | 82782733 | 66272083 | tier1 | 5UTR-CDS | 14074 | NA | 0 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | DLG2|CARD17 | DLG2 | CARD17 | 11 | 11 | -1 | -1 | 5 | 7 | 6 | 0.13 | 83252725 | 104970148 | tier1 | Out-of-frame | 4880 | NA | 0.37934 |
| BRCA | TCGA-A8-A09C-01A | TCGA-A8-A09C | GLCE|NOX5 | GLCE | NOX5 | 15 | 15 | 1 | 1 | 2 | 1 | 1 | 1.8 | 69453096 | 69267068 | tier2 | 5UTR-5UTR | 7089 | NA | 0.34401 |
| BRCA | TCGA-AR-A0U3-01A | TCGA-AR-A0U3 | ZNF613|CYP2A6 | ZNF613 | CYP2A6 | 19 | 19 | 1 | -1 | 59 | 9 | 9 | 0.51 | 52433149 | 41354668 | tier1 | 5UTR-CDS | 20589 | NA | 0 |
| BRCA | TCGA-B6-A0X7-01A | TCGA-B6-A0X7 | NCOA4|OR13A1 | NCOA4 | OR13A1 | 10 | 10 | 1 | -1 | 8 | 9 | 6 | 0.96 | 51565296 | 45803256 | tier1 | 5UTR-5UTR | 11212 | NA | 0.36979 |
| LGG | TCGA-DU-6403-01A | TCGA-DU-6403 | FRMD4A|OR13A1 | FRMD4A | OR13A1 | 10 | 10 | -1 | -1 | 2 | 8 | 8 | 1.8 | 14050059 | 45799948 | tier2 | CDS-5UTR | 6721 | NA | 0.35678 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | C12orf63|SLC5A8 | C12orf63 | SLC5A8 | 12 | 12 | 1 | -1 | 18 | 16 | 8 | 5.1 | 97102581 | 101588940 | tier1 | In-frame | 2448 | validated | 0 |
| LUSC | TCGA-O2-A5IB-01A | TCGA-O2-A5IB | PPP6R3|MGAM | PPP6R3 | MGAM | 11 | 7 | 1 | 1 | 4 | 9 | 7 | 1.7 | 68312492 | 141705329 | tier1 | CDS-5UTR | 13464 | NA | 0.33684 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | FAM49B|MGAM | FAM49B | MGAM | 8 | 7 | -1 | 1 | 5 | 4 | 4 | 0.72 | 130915558 | 141705329 | tier1 | 5UTR-5UTR | 6182 | NA | 0.34699 |
| BRCA | TCGA-AO-A0J5-01A | TCGA-AO-A0J5 | FUT8|FNTB | FUT8 | FNTB | 14 | 14 | 1 | 1 | 19 | 5 | 5 | 0.47 | 65922436 | 65470967 | tier1 | 5UTR-CDS | 6835 | NA | 0.35423 |
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