Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | ZNF587|APOM | ZNF587 | APOM | 19 | 6 | 1 | 1 | 2 | 1 | 1 | 1 | 58331313 | 31624249 | tier3 | In-frame | 20572 | non-validated | 0 |
| BRCA | TCGA-D8-A13Y-01A | TCGA-D8-A13Y | PRRC2A|NCR3 | PRRC2A | NCR3 | 6 | 6 | 1 | -1 | 141 | 27 | 23 | 0.27 | 31604385 | 31557676 | tier1 | In-frame | 13636 | NA | 0.345 |
| LGG | TCGA-WH-A86K-01A | TCGA-WH-A86K | MICA|NCR3 | MICA | NCR3 | 6 | 6 | 1 | -1 | 13 | 4 | 4 | 0.3 | 31371479 | 31557903 | tier1 | In-frame | 10339 | NA | 0.35353 |
| MESO | TCGA-XT-AASU-01A | TCGA-XT-AASU | MICA|NCR3 | MICA | NCR3 | 6 | 6 | 1 | -1 | 304 | 31 | 25 | 0.3 | 31368540 | 31557676 | tier1 | 5UTR-CDS | 10340 | NA | 0.35353 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | PAAF1|NCR3 | PAAF1 | NCR3 | 11 | 6 | 1 | -1 | 8 | 7 | 6 | 100 | 73588113 | 31557676 | tier1 | Out-of-frame | 12161 | NA | 0.36484 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | TRERF1|OR2H1 | TRERF1 | OR2H1 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.068 | 42418915 | 29426231 | tier1 | 5UTR-5UTR | 18591 | NA | 0 |
| BRCA | TCGA-GM-A2DF-01A | TCGA-GM-A2DF | FCHSD2|C11orf83 | FCHSD2 | C11orf83 | 11 | 11 | -1 | 1 | 9 | 5 | 5 | 1.3 | 72851076 | 62438756 | tier1 | CDS-5UTR | 6389 | non-validated | 0 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | C7orf50|CD177 | C7orf50 | CD177 | 7 | 19 | -1 | 1 | 11 | 5 | 5 | 0.19 | 1166893 | 43858005 | tier1 | Out-of-frame | 2793 | non-validated | 0 |
| OV | TCGA-24-1558-01A | TCGA-24-1558 | ZNF709|CD177 | ZNF709 | CD177 | 19 | 19 | -1 | 1 | 11 | 2 | 1 | 1.5 | 12624558 | 43858359 | tier2 | NA | 20636 | non-validated | 0 |
| BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | MATR3|PCDHA2 | MATR3 | PCDHA2 | 5 | 5 | 1 | 1 | 9 | 17 | 16 | 1 | 138629494 | 140358534 | tier1 | 5UTR-CDS | 10036 | NA | 0.36972 |
| LIHC | TCGA-DD-AACL-01A | TCGA-DD-AACL | LMBR1|PRSS1 | LMBR1 | PRSS1 | 7 | 7 | -1 | 1 | 2 | 6 | 6 | 1.7 | 156589083 | 142460719 | tier2 | In-frame | 9384 | NA | 0.35782 |
| PAAD | TCGA-F2-A44H-01A | TCGA-F2-A44H | TNKS1BP1|PRSS1 | TNKS1BP1 | PRSS1 | 11 | 7 | -1 | 1 | 2 | 12 | 7 | 0.59 | 57085292 | 142457330 | tier4 | CDS-5UTR | 18356 | NA | 0 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | SOS1|CDKL4 | SOS1 | CDKL4 | 2 | 2 | -1 | -1 | 7 | 1 | 1 | 0.47 | 39347477 | 39417643 | tier3 | Out-of-frame | 16608 | NA | 0 |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | SOS1|CDKL4 | SOS1 | CDKL4 | 2 | 2 | -1 | -1 | 8 | 1 | 1 | 0.47 | 39347477 | 39417643 | tier2 | Out-of-frame | 16609 | NA | 0 |
| ACC | TCGA-OR-A5JS-01A | TCGA-OR-A5JS | CCNG1|SLCO6A1 | CCNG1 | SLCO6A1 | 5 | 5 | 1 | -1 | 11 | 4 | 3 | 0.27 | 162871487 | 101709198 | tier1 | 3UTR-CDS | 3221 | NA | 0.36879 |
| LUSC | TCGA-66-2754-01A | TCGA-66-2754 | RAD51D|SLCO6A1 | RAD51D | SLCO6A1 | 17 | 5 | -1 | -1 | 7 | 7 | 6 | 0.82 | 33433405 | 101748847 | tier1 | Out-of-frame | 14175 | NA | 0 |
| PCPG | TCGA-WB-A81D-01A | TCGA-WB-A81D | MSH2|SLCO6A1 | MSH2 | SLCO6A1 | 2 | 5 | 1 | -1 | 13 | 12 | 9 | 1.2 | 47672796 | 101709198 | tier1 | Out-of-frame | 10701 | NA | 0.36696 |
| BRCA | TCGA-A2-A3XZ-01A | TCGA-A2-A3XZ | SEC24D|CFI | SEC24D | CFI | 4 | 4 | -1 | -1 | 11 | 11 | 10 | 0.089 | 119718838 | 110687980 | tier1 | In-frame | 15518 | NA | 0 |
| SKCM | TCGA-EE-A2MU-06A | TCGA-EE-A2MU | DDX17|CPT1B | DDX17 | CPT1B | 22 | 22 | -1 | -1 | 16 | 11 | 10 | 0.14 | 38894090 | 51010551 | tier1 | In-frame | 4646 | NA | 0.3691 |
| BRCA | TCGA-A2-A0T1-01A | TCGA-A2-A0T1 | DAB2IP|HTN3 | DAB2IP | HTN3 | 9 | 4 | 1 | 1 | 12 | 3 | 3 | 0.64 | 124441060 | 70896445 | tier1 | CDS-5UTR | 4533 | NA | 0.37444 |
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