Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A5UL-06A | TCGA-EB-A5UL | FNDC3B|SUCNR1 | FNDC3B | SUCNR1 | 3 | 3 | 1 | 1 | 4 | 3 | 3 | 1.4 | 171851336 | 151597640 | tier1 | CDS-5UTR | 6616 | NA | 0.35399 |
| BRCA | TCGA-BH-A5IZ-01A | TCGA-BH-A5IZ | LARP4|RYR3 | LARP4 | RYR3 | 12 | 15 | 1 | 1 | 8 | 11 | 11 | 3.6 | 50794811 | 34028436 | tier1 | Out-of-frame | 9237 | NA | 0.36174 |
| HNSC | TCGA-HD-8224-01A | TCGA-HD-8224 | C15orf41|RYR3 | C15orf41 | RYR3 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 0.12 | 36872162 | 34014916 | tier2 | Out-of-frame | 2474 | NA | 0 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | INPP5F|GRK5 | INPP5F | GRK5 | 10 | 10 | 1 | 1 | 31 | 23 | 23 | 0.47 | 121485871 | 121140327 | tier1 | In-frame | 8253 | validated | 0.3817 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | ST7|CAPZA2 | ST7 | CAPZA2 | 7 | 7 | 1 | 1 | 486 | 374 | 349 | 0.86 | 116593745 | 116556114 | tier1 | Out-of-frame | 16957 | non-validated | 0 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | ST7OT4|CAPZA2 | ST7OT4 | CAPZA2 | 7 | 7 | 1 | 1 | 68 | 21 | 18 | 0.47 | 116595207 | 116556114 | tier1 | In-frame | 16973 | non-validated | 0 |
| LIHC | TCGA-DD-AACN-01A | TCGA-DD-AACN | ST7|CAPZA2 | ST7 | CAPZA2 | 7 | 7 | 1 | 1 | 33 | 20 | 17 | 0.86 | 116593745 | 116556114 | tier1 | Out-of-frame | 16955 | NA | 0 |
| LIHC | TCGA-DD-AACN-01A | TCGA-DD-AACN | ST7OT4|CAPZA2 | ST7OT4 | CAPZA2 | 7 | 7 | 1 | 1 | 12 | 3 | 3 | 0.47 | 116595207 | 116556114 | tier1 | In-frame | 16972 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | ST7|CAPZA2 | ST7 | CAPZA2 | 7 | 7 | 1 | 1 | 4 | 3 | 2 | 0.86 | 116593745 | 116528181 | tier1 | Out-of-frame | 16956 | NA | 0 |
| PRAD | TCGA-V1-A9OL-01A | TCGA-V1-A9OL | ST7|CAPZA2 | ST7 | CAPZA2 | 7 | 7 | 1 | 1 | 23 | 15 | 14 | 0.86 | 116593745 | 116556114 | tier1 | Out-of-frame | 16958 | NA | 0 |
| PRAD | TCGA-V1-A9OL-01A | TCGA-V1-A9OL | ST7OT4|CAPZA2 | ST7OT4 | CAPZA2 | 7 | 7 | 1 | 1 | 10 | 2 | 2 | 0.47 | 116595207 | 116556114 | tier1 | In-frame | 16974 | NA | 0 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | NARS2|TOP1 | NARS2 | TOP1 | 11 | 20 | -1 | 1 | 52 | 21 | 20 | 1.2 | 78239888 | 39721112 | tier1 | In-frame | 11100 | NA | 0.36238 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | TBC1D22A|SREBF2 | TBC1D22A | SREBF2 | 22 | 22 | 1 | 1 | 93 | 48 | 46 | 0.22 | 47308084 | 42262835 | tier1 | In-frame | 17479 | NA | 0 |
| BRCA | TCGA-A8-A09M-01A | TCGA-A8-A09M | FAM38A|APRT | FAM38A | APRT | 16 | 16 | -1 | -1 | 100 | 126 | 116 | 0.018 | 88792692 | 88876248 | tier1 | Out-of-frame | 6163 | NA | 0.34388 |
| BRCA | TCGA-A2-A0T0-01A | TCGA-A2-A0T0 | APBB2|DMD | APBB2 | DMD | 4 | X | -1 | -1 | 5 | 1 | 1 | 0.37 | 40823888 | 31525570 | tier2 | In-frame | 1106 | NA | 0.37554 |
| LUAD | TCGA-75-5146-01A | TCGA-75-5146 | CPNE1|DMD | CPNE1 | DMD | 20 | X | -1 | -1 | 50 | 4 | 3 | 1.1 | 34246852 | 32408298 | tier1 | 5UTR-CDS | 4132 | NA | 0.37925 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | HNRNPM|DMD | HNRNPM | DMD | 19 | X | 1 | -1 | 38 | 33 | 27 | 0.11 | 8530399 | 31986631 | tier1 | In-frame | 7903 | NA | 0.38184 |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | RABEP1|RORB | RABEP1 | RORB | 17 | 9 | 1 | 1 | 9 | 17 | 17 | 0.2 | 5250220 | 77245198 | tier1 | In-frame | 14140 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | NCAM2|RORB | NCAM2 | RORB | 21 | 9 | 1 | 1 | 2 | 2 | 1 | 0.024 | 22370936 | 77245198 | tier2 | In-frame | 11144 | NA | 0.37225 |
| SKCM | TCGA-EE-A29L-06A | TCGA-EE-A29L | CLIP2|RORB | CLIP2 | RORB | 7 | 9 | 1 | 1 | 2 | 1 | 1 | 0.2 | 73731997 | 77245198 | tier2 | In-frame | 3806 | NA | 0.37243 |
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