Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | BCAR3|ABCA4 | BCAR3 | ABCA4 | 1 | 1 | -1 | -1 | 139 | 107 | 102 | 0.84 | 94054534 | 94495187 | tier1 | In-frame | 1968 | NA | 0.37508 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | RREB1|GPX6 | RREB1 | GPX6 | 6 | 6 | 1 | -1 | 8 | 4 | 4 | 6.5 | 7108293 | 28474206 | tier1 | 5UTR-CDS | 15127 | NA | 0 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | FTSJD2|GPX6 | FTSJD2 | GPX6 | 6 | 6 | 1 | -1 | 11 | 8 | 8 | 0.85 | 37403538 | 28478681 | tier2 | Out-of-frame | 6818 | NA | 0.35087 |
| BLCA | TCGA-XF-AAMQ-01A | TCGA-XF-AAMQ | RAD51B|SMOC1 | RAD51B | SMOC1 | 14 | 14 | 1 | 1 | 4 | 4 | 3 | 4.1 | 68934967 | 70459134 | tier1 | In-frame | 14173 | NA | 0 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | SRF|F5 | SRF | F5 | 6 | 1 | 1 | -1 | 64 | 42 | 42 | 0.087 | 43141851 | 169483697 | tier1 | In-frame | 16838 | NA | 0 |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | NOS1AP|F5 | NOS1AP | F5 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.4 | 162313766 | 169484864 | tier4 | Out-of-frame | 11654 | non-validated | 0.37248 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | ANKRD22|LRRTM3 | ANKRD22 | LRRTM3 | 10 | 10 | -1 | 1 | 17 | 14 | 12 | 2.4 | 90611344 | 68857345 | tier1 | In-frame | 973 | NA | 0.35588 |
| HNSC | TCGA-CN-4735-01A | TCGA-CN-4735 | TRAF3|CDC42BPB | TRAF3 | CDC42BPB | 14 | 14 | 1 | -1 | 14 | 7 | 4 | 0.62 | 103296809 | 103450093 | tier1 | 5UTR-CDS | 18545 | NA | 0 |
| COAD | TCGA-A6-A565-01A | TCGA-A6-A565 | SPTBN1|MUC2 | SPTBN1 | MUC2 | 2 | 11 | 1 | 1 | 2 | 29 | 23 | 0.8 | 54856940 | 1092080 | tier3 | Out-of-frame | 16793 | non-validated | 0 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | EXOSC10|MTOR | EXOSC10 | MTOR | 1 | 1 | -1 | -1 | 7 | 10 | 9 | 1 | 11139768 | 11190834 | tier1 | In-frame | 5919 | NA | 0.35201 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | DDI2|MTOR | DDI2 | MTOR | 1 | 1 | 1 | -1 | 22 | 15 | 13 | 3.3 | 15944303 | 11227574 | tier1 | Out-of-frame | 4637 | NA | 0.34544 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | CASZ1|MTOR | CASZ1 | MTOR | 1 | 1 | -1 | -1 | 12 | 28 | 26 | 0.71 | 10765549 | 11288975 | tier1 | 5UTR-CDS | 3033 | NA | 0.33645 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ZBTB17|MTOR | ZBTB17 | MTOR | 1 | 1 | -1 | -1 | 11 | 4 | 4 | 0.86 | 16269559 | 11227574 | tier1 | Out-of-frame | 20073 | NA | 0 |
| UCEC | TCGA-D1-A3JQ-01A | TCGA-D1-A3JQ | KAZN|MTOR | KAZN | MTOR | 1 | 1 | 1 | -1 | 4 | 13 | 11 | 0.54 | 15251068 | 11206848 | tier1 | In-frame | 8558 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | POU2F1|CD247 | POU2F1 | CD247 | 1 | 1 | 1 | -1 | 3 | 5 | 4 | 0.07 | 167370793 | 167404671 | tier2 | Out-of-frame | 13197 | NA | 0.38036 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | DNM3|CD247 | DNM3 | CD247 | 1 | 1 | 1 | -1 | 59 | 30 | 30 | 1.6 | 172100428 | 167410004 | tier1 | Out-of-frame | 4994 | NA | 0.3714 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | AGAP3|GRM3 | AGAP3 | GRM3 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 1.7 | 150784159 | 86479686 | tier2 | Out-of-frame | 633 | validated | 0.37198 |
| LUSC | TCGA-22-4594-01A | TCGA-22-4594 | DMTF1|GRM3 | DMTF1 | GRM3 | 7 | 7 | 1 | 1 | 3 | 1 | 1 | 2.4 | 86794366 | 86415577 | tier3 | Out-of-frame | 4912 | NA | 0.37364 |
| OV | TCGA-09-1669-01A | TCGA-09-1669 | RASA2|SUCNR1 | RASA2 | SUCNR1 | 3 | 3 | 1 | 1 | 7 | 7 | 7 | 1 | 141235273 | 151597640 | tier1 | CDS-5UTR | 14357 | NA | 0 |
| PRAD | TCGA-M7-A720-01A | TCGA-M7-A720 | CREB1|SUCNR1 | CREB1 | SUCNR1 | 2 | 3 | 1 | 1 | 4 | 1 | 1 | 4.8 | 208425884 | 151597640 | tier4 | CDS-5UTR | 4191 | NA | 0.38246 |
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