Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | NF1|GFPT1 | NF1 | GFPT1 | 17 | 2 | 1 | -1 | 12 | 13 | 13 | 0.32 | 29664600 | 69556930 | tier1 | In-frame | 11406 | NA | 0.37263 |
| GBM | TCGA-06-5411-01A | TCGA-06-5411 | NFASC|NTRK1 | NFASC | NTRK1 | 1 | 1 | 1 | 1 | 168 | 779 | 647 | 0.29 | 204951148 | 156844363 | tier1 | In-frame | 11427 | non-validated | 0.38859 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | TPM3|NTRK1 | TPM3 | NTRK1 | 1 | 1 | -1 | 1 | 15 | 50 | 49 | 3.7 | 154142876 | 156845312 | tier1 | In-frame | 18491 | NA | 0 |
| THCA | TCGA-DJ-A4UP-01A | TCGA-DJ-A4UP | IRF2BP2|NTRK1 | IRF2BP2 | NTRK1 | 1 | 1 | -1 | 1 | 241 | 195 | 11 | 0.45 | 234744241 | 156844363 | tier1 | In-frame | 8343 | NA | 0.38899 |
| THCA | TCGA-ET-A40S-01A | TCGA-ET-A40S | SQSTM1|NTRK1 | SQSTM1 | NTRK1 | 5 | 1 | 1 | 1 | 699 | 433 | 349 | 1 | 179252226 | 156844363 | tier1 | In-frame | 16812 | NA | 0 |
| THCA | TCGA-CE-A3MD-01A | TCGA-CE-A3MD | SSBP2|NTRK1 | SSBP2 | NTRK1 | 5 | 1 | -1 | 1 | 154 | 87 | 81 | 0.84 | 80742687 | 156845312 | tier1 | In-frame | 16907 | NA | 0 |
| THCA | TCGA-EM-A3AO-01A | TCGA-EM-A3AO | TFG|NTRK1 | TFG | NTRK1 | 3 | 1 | 1 | 1 | 67 | 172 | 158 | 100 | 100455560 | 156844363 | tier1 | In-frame | 17723 | NA | 0 |
| THCA | TCGA-EL-A3D4-01A | TCGA-EL-A3D4 | TPM3|NTRK1 | TPM3 | NTRK1 | 1 | 1 | -1 | 1 | 18 | 76 | 69 | 3.7 | 154142876 | 156844363 | tier1 | In-frame | 18492 | NA | 0 |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | FBXW4|MGEA5 | FBXW4 | MGEA5 | 10 | 10 | -1 | -1 | 12 | 9 | 8 | 0.45 | 103427643 | 103553755 | tier4 | Out-of-frame | 6371 | non-validated | 0.35464 |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | ATF7IP|TXNRD1 | ATF7IP | TXNRD1 | 12 | 12 | 1 | 1 | 2 | 2 | 1 | 0.69 | 14518761 | 104645305 | tier4 | 5UTR-CDS | 1612 | NA | 0.36701 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | CHPT1|TXNRD1 | CHPT1 | TXNRD1 | 12 | 12 | 1 | 1 | 10 | 9 | 6 | 0.98 | 102091912 | 104707023 | tier1 | In-frame | 3702 | validated | 0.35349 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | METTL5|TLK1 | METTL5 | TLK1 | 2 | 2 | -1 | -1 | 6 | 14 | 14 | 0.023 | 170680999 | 171914707 | tier1 | In-frame | 10280 | NA | 0.37813 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | RAD51B|BAZ1A | RAD51B | BAZ1A | 14 | 14 | 1 | -1 | 3 | 1 | 1 | 1.9 | 68353921 | 35228052 | tier3 | Out-of-frame | 14166 | NA | 0 |
| BRCA | TCGA-A2-A0CY-01A | TCGA-A2-A0CY | RP11-176H8.1|BAZ1A | RP11-176H8.1 | BAZ1A | 14 | 14 | -1 | -1 | 2 | 3 | 3 | 0.35 | 31922481 | 35228052 | tier4 | In-frame | 14923 | NA | 0 |
| LUAD | TCGA-64-1679-01A | TCGA-64-1679 | ZNF253|BAZ1A | ZNF253 | BAZ1A | 19 | 14 | 1 | -1 | 12 | 3 | 3 | 1.7 | 19976808 | 35280242 | tier1 | Out-of-frame | 20418 | NA | 0 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | SUSD4|RYR2 | SUSD4 | RYR2 | 1 | 1 | -1 | 1 | 14 | 14 | 13 | 0.048 | 223536620 | 237664011 | tier1 | In-frame | 17203 | NA | 0 |
| ESCA | TCGA-IG-A3YB-01A | TCGA-IG-A3YB | KIF5C|STK39 | KIF5C | STK39 | 2 | 2 | 1 | -1 | 3 | 8 | 8 | 0.27 | 149633312 | 169038600 | tier1 | Out-of-frame | 9015 | validated | 0.37158 |
| LUSC | TCGA-34-5236-01A | TCGA-34-5236 | SP3|STK39 | SP3 | STK39 | 2 | 2 | -1 | -1 | 7 | 6 | 6 | 0.25 | 174777798 | 169038600 | tier1 | In-frame | 16643 | NA | 0 |
| PAAD | TCGA-IB-A7M4-01A | TCGA-IB-A7M4 | CERS6|STK39 | CERS6 | STK39 | 2 | 2 | 1 | -1 | 2 | 1 | 1 | 0.93 | 169313128 | 169038600 | tier4 | Out-of-frame | 3580 | NA | 0.36769 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | BCAR3|ABCA4 | BCAR3 | ABCA4 | 1 | 1 | -1 | -1 | 13 | 3 | 3 | 0.84 | 94079404 | 94505683 | tier1 | In-frame | 1969 | NA | 0.37508 |
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