Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | SEC22A|TXNRD3 | SEC22A | TXNRD3 | 3 | 3 | 1 | -1 | 20 | 12 | 9 | 0.13 | 122944144 | 126352894 | tier1 | NA | 15502 | NA | 0 |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | SNAI1|SLC9A8 | SNAI1 | SLC9A8 | 20 | 20 | 1 | 1 | 110 | 57 | 54 | 0.11 | 48599678 | 48481265 | tier1 | CDS-5UTR | 16478 | NA | 0 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | ZFP28|SLC9A8 | ZFP28 | SLC9A8 | 19 | 20 | 1 | 1 | 8 | 19 | 15 | 0.92 | 57061974 | 48456078 | tier1 | In-frame | 20266 | NA | 0 |
| OV | TCGA-61-2111-01A | TCGA-61-2111 | ZC3H7B|SLC9A8 | ZC3H7B | SLC9A8 | 22 | 20 | 1 | 1 | 2 | 9 | 8 | 0.38 | 41742212 | 48504366 | tier2 | In-frame | 20156 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | BCAS4|SLC9A8 | BCAS4 | SLC9A8 | 20 | 20 | 1 | 1 | 4 | 3 | 3 | 1.1 | 49434819 | 48481265 | tier1 | CDS-5UTR | 2005 | NA | 0.33765 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | KLHDC4|SPG7 | KLHDC4 | SPG7 | 16 | 16 | -1 | 1 | 7 | 10 | 10 | 2.6 | 87782279 | 89611056 | tier1 | Out-of-frame | 9052 | NA | 0.37712 |
| PRAD | TCGA-KK-A8I8-01A | TCGA-KK-A8I8 | C12orf29|IRAK4 | C12orf29 | IRAK4 | 12 | 12 | 1 | 1 | 13 | 10 | 7 | 0.12 | 88429515 | 44161906 | tier1 | CDS-5UTR | 2414 | NA | 0 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | CS|PRIM1 | CS | PRIM1 | 12 | 12 | -1 | -1 | 12 | 4 | 4 | 1.9 | 56667371 | 57125518 | tier1 | Out-of-frame | 4256 | NA | 0.3547 |
| LUAD | TCGA-55-8301-01A | TCGA-55-8301 | RNF41|PRIM1 | RNF41 | PRIM1 | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 2.1 | 56615544 | 57144979 | tier3 | 5UTR-CDS | 14846 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TMEM117|PRIM1 | TMEM117 | PRIM1 | 12 | 12 | 1 | -1 | 8 | 5 | 4 | 0.5 | 44238731 | 57144979 | tier1 | In-frame | 17939 | NA | 0 |
| SKCM | TCGA-EE-A2A6-06A | TCGA-EE-A2A6 | CALD1|AKR1B10 | CALD1 | AKR1B10 | 7 | 7 | 1 | 1 | 16 | 15 | 1 | 0.26 | 134576424 | 134215395 | tier2 | Out-of-frame | 2899 | NA | 0.36625 |
| BRCA | TCGA-A7-A26I-01B | TCGA-A7-A26I | CLPTM1|CYP2A7 | CLPTM1 | CYP2A7 | 19 | 19 | 1 | -1 | 31 | 116 | 104 | 0.2 | 45488561 | 41386533 | tier1 | Out-of-frame | 3841 | NA | 0.34784 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | NAA15|LPAR1 | NAA15 | LPAR1 | 4 | 9 | 1 | -1 | 16 | 37 | 33 | 0.23 | 140222985 | 113638002 | tier1 | Out-of-frame | 11036 | NA | 0.35477 |
| LGG | TCGA-DU-5853-01A | TCGA-DU-5853 | SNX30|LPAR1 | SNX30 | LPAR1 | 9 | 9 | 1 | -1 | 3 | 2 | 2 | 0.99 | 115513437 | 113638002 | tier1 | Out-of-frame | 16559 | NA | 0 |
| SARC | TCGA-HS-A5NA-01A | TCGA-HS-A5NA | PPM1G|LPAR1 | PPM1G | LPAR1 | 2 | 9 | -1 | -1 | 2 | 2 | 2 | 0.3 | 27609956 | 113735838 | tier3 | CDS-5UTR | 13317 | NA | 0.3627 |
| THCA | TCGA-4C-A93U-01A | TCGA-4C-A93U | ERRFI1|CACNA1E | ERRFI1 | CACNA1E | 1 | 1 | -1 | 1 | 5 | 13 | 13 | 0.51 | 8086218 | 181546902 | tier1 | 5UTR-CDS | 5792 | NA | 0.36954 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | HNRNPH3|SLC29A3 | HNRNPH3 | SLC29A3 | 10 | 10 | 1 | 1 | 14 | 43 | 42 | 0.65 | 70099312 | 73121711 | tier1 | Out-of-frame | 7899 | NA | 0.36667 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | FAM179B|STYX | FAM179B | STYX | 14 | 14 | 1 | 1 | 2 | 2 | 2 | 1.1 | 45433670 | 53211570 | tier2 | In-frame | 6111 | NA | 0.35066 |
| PRAD | TCGA-J4-A6G3-01A | TCGA-J4-A6G3 | PUM1|GFPT1 | PUM1 | GFPT1 | 1 | 2 | -1 | -1 | 2 | 1 | 1 | 0.48 | 31452909 | 69601245 | tier3 | In-frame | 13940 | NA | 0 |
| SARC | TCGA-K1-A6RV-01A | TCGA-K1-A6RV | TCF7L1|GFPT1 | TCF7L1 | GFPT1 | 2 | 2 | 1 | -1 | 8 | 1 | 1 | 100 | 85361573 | 69601245 | tier2 | Out-of-frame | 17598 | NA | 0 |
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