Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-49-AAQV-01A | TCGA-49-AAQV | UNC45A|BLM | UNC45A | BLM | 15 | 15 | 1 | 1 | 2 | 2 | 2 | 0.053 | 91483703 | 91358332 | tier3 | Out-of-frame | 19246 | NA | 0 |
| SKCM | TCGA-ER-A196-01A | TCGA-ER-A196 | CSTF1|BLM | CSTF1 | BLM | 20 | 15 | 1 | 1 | 20 | 26 | 25 | 0.39 | 54967769 | 91352367 | tier1 | 5UTR-CDS | 4304 | NA | 0.37272 |
| KIRC | TCGA-B0-4696-01A | TCGA-B0-4696 | TBC1D5|HTT | TBC1D5 | HTT | 3 | 4 | -1 | 1 | 8 | 10 | 8 | 0.075 | 17783973 | 3225133 | tier1 | 5UTR-CDS | 17500 | NA | 0 |
| STAD | TCGA-BR-8484-01A | TCGA-BR-8484 | PCGF3|HTT | PCGF3 | HTT | 4 | 4 | 1 | 1 | 8 | 18 | 15 | 2.7 | 738476 | 3136128 | tier1 | In-frame | 12396 | NA | 0.378 |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | MAP7|MAP3K5 | MAP7 | MAP3K5 | 6 | 6 | -1 | -1 | 32 | 33 | 30 | 0.71 | 136871480 | 136904878 | tier1 | Out-of-frame | 9922 | NA | 0.38576 |
| PRAD | TCGA-HC-A632-01A | TCGA-HC-A632 | MAP7|MAP3K5 | MAP7 | MAP3K5 | 6 | 6 | -1 | -1 | 11 | 8 | 7 | 0.71 | 136677830 | 136960776 | tier1 | In-frame | 9921 | NA | 0.38576 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | EYA4|MAP3K5 | EYA4 | MAP3K5 | 6 | 6 | 1 | -1 | 4 | 6 | 6 | 3.7 | 133562887 | 137026271 | tier1 | 5UTR-CDS | 5951 | NA | 0.38709 |
| LUSC | TCGA-21-5783-01A | TCGA-21-5783 | ZSCAN5A|GALP | ZSCAN5A | GALP | 19 | 19 | -1 | 1 | 6 | 4 | 4 | 0.77 | 56824652 | 56688439 | tier1 | CDS-5UTR | 20714 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | EYA2|SLC2A10 | EYA2 | SLC2A10 | 20 | 20 | 1 | 1 | 12 | 9 | 9 | 1.5 | 45644936 | 45353680 | tier1 | In-frame | 5944 | NA | 0.35839 |
| BRCA | TCGA-A2-A0CU-01A | TCGA-A2-A0CU | MLLT3|SLC28A3 | MLLT3 | SLC28A3 | 9 | 9 | -1 | -1 | 7 | 1 | 1 | 0.34 | 20456702 | 86928369 | tier2 | In-frame | 10518 | NA | 0.36133 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | SHB|SLC28A3 | SHB | SLC28A3 | 9 | 9 | -1 | -1 | 5 | 4 | 4 | 1.7 | 38067926 | 86928369 | tier1 | In-frame | 15875 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | PPP4R4|MYH6 | PPP4R4 | MYH6 | 14 | 14 | 1 | -1 | 2 | 2 | 2 | 2.9 | 94642464 | 23855340 | tier2 | Out-of-frame | 13443 | NA | 0.3551 |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | RNF213|MYH6 | RNF213 | MYH6 | 17 | 14 | 1 | -1 | 3 | 3 | 3 | 0.093 | 78346534 | 23851771 | tier1 | Out-of-frame | 14813 | NA | 0 |
| UCEC | TCGA-EY-A3L3-01A | TCGA-EY-A3L3 | PPP4R1|DPP4 | PPP4R1 | DPP4 | 18 | 2 | -1 | -1 | 24 | 21 | 9 | 0.55 | 9561978 | 162851882 | tier1 | In-frame | 13437 | NA | 0.3629 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | KIAA1432|PDCD1LG2 | KIAA1432 | PDCD1LG2 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 0.047 | 5656690 | 5522533 | tier3 | CDS-5UTR | 8879 | NA | 0.34921 |
| HNSC | TCGA-HL-7533-01A | TCGA-HL-7533 | KIAA1432|PDCD1LG2 | KIAA1432 | PDCD1LG2 | 9 | 9 | 1 | 1 | 24 | 35 | 30 | 0.047 | 5629453 | 5549335 | tier1 | Out-of-frame | 8880 | NA | 0.34921 |
| BRCA | TCGA-PL-A8LX-01A | TCGA-PL-A8LX | ITPA|SLC22A24 | ITPA | SLC22A24 | 20 | 11 | 1 | -1 | 3 | 3 | 2 | 2 | 3194704 | 62847469 | tier1 | In-frame | 8432 | NA | 0.34854 |
| SKCM | TCGA-GN-A265-06A | TCGA-GN-A265 | GTF3C5|PHF2 | GTF3C5 | PHF2 | 9 | 9 | 1 | 1 | 2 | 3 | 3 | 0.039 | 135930196 | 96435867 | tier3 | Out-of-frame | 7545 | NA | 0.35595 |
| BLCA | TCGA-CU-A0YO-01A | TCGA-CU-A0YO | RBM17|PSAP | RBM17 | PSAP | 10 | 10 | 1 | -1 | 2 | 8 | 6 | 0.38 | 6131156 | 73594262 | tier4 | 5UTR-CDS | 14447 | NA | 0 |
| PCPG | TCGA-SQ-A6I4-01A | TCGA-SQ-A6I4 | AC011333.1|PSAP | AC011333.1 | PSAP | 5 | 10 | 1 | -1 | 2 | 37 | 37 | 0.87 | 173473165 | 73581764 | tier4 | NA | 161 | NA | 0.34669 |
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