Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SPON1|CD47 | SPON1 | CD47 | 11 | 3 | 1 | -1 | 3 | 5 | 5 | 0.28 | 14063201 | 107799191 | tier1 | Out-of-frame | 16742 | NA | 0 |
| LIHC | TCGA-ZP-A9D4-01A | TCGA-ZP-A9D4 | FBXL17|SPINK14 | FBXL17 | SPINK14 | 5 | 5 | -1 | 1 | 2 | 3 | 2 | 100 | 107684100 | 147553797 | tier3 | In-frame | 6295 | NA | 0.34675 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | PHKB|SCN8A | PHKB | SCN8A | 16 | 12 | 1 | 1 | 36 | 16 | 16 | 0.41 | 47730399 | 52077958 | tier1 | In-frame | 12748 | validated | 0.3668 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | KIAA1033|HCAR1 | KIAA1033 | HCAR1 | 12 | 12 | 1 | -1 | 21 | 100 | 92 | 0.75 | 105536336 | 123105249 | tier1 | CDS-3UTR | 8817 | NA | 0.32741 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | ZNF586|SRC | ZNF586 | SRC | 19 | 20 | 1 | 1 | 17 | 3 | 3 | 0.031 | 58281246 | 36028518 | tier1 | 5UTR-CDS | 20571 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | ZNF587|SRC | ZNF587 | SRC | 19 | 20 | 1 | 1 | 68 | 28 | 22 | 1.1 | 58331313 | 36028518 | tier1 | Out-of-frame | 20574 | NA | 0 |
| COAD | TCGA-NH-A50V-01A | TCGA-NH-A50V | ITCH|SRC | ITCH | SRC | 20 | 20 | 1 | 1 | 4 | 3 | 3 | 3.7 | 32957276 | 35993607 | tier1 | 5UTR-5UTR | 8365 | non-validated | 0.39021 |
| BRCA | TCGA-A2-A0EX-01A | TCGA-A2-A0EX | FBXO16|ADAM32 | FBXO16 | ADAM32 | 8 | 8 | -1 | 1 | 8 | 5 | 4 | 1.5 | 28304688 | 39131831 | tier1 | Out-of-frame | 6338 | NA | 0.3517 |
| BRCA | TCGA-C8-A8HP-01A | TCGA-C8-A8HP | SLX4|ADAM32 | SLX4 | ADAM32 | 16 | 8 | -1 | 1 | 9 | 7 | 7 | 8.2 | 3650980 | 39114706 | tier1 | Out-of-frame | 16331 | NA | 0 |
| COAD | TCGA-CM-6166-01A | TCGA-CM-6166 | RNF170|ADAM32 | RNF170 | ADAM32 | 8 | 8 | -1 | 1 | 6 | 7 | 6 | 0.38 | 42742871 | 39079129 | tier1 | Out-of-frame | 14784 | NA | 0 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | RFFL|ADAM32 | RFFL | ADAM32 | 17 | 8 | -1 | 1 | 17 | 11 | 8 | 0.67 | 33390595 | 39004649 | tier1 | 5UTR-CDS | 14589 | NA | 0 |
| LUSC | TCGA-43-6770-01A | TCGA-43-6770 | RPAP3|ADAM32 | RPAP3 | ADAM32 | 12 | 8 | -1 | 1 | 34 | 31 | 29 | 0.75 | 48073276 | 39141105 | tier1 | Out-of-frame | 14969 | NA | 0 |
| SARC | TCGA-SG-A849-01A | TCGA-SG-A849 | DOCK7|ADAM32 | DOCK7 | ADAM32 | 1 | 8 | -1 | 1 | 7 | 2 | 2 | 0.66 | 63018403 | 39080559 | tier1 | In-frame | 5043 | NA | 0.35906 |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | NUB1|ABCB8 | NUB1 | ABCB8 | 7 | 7 | 1 | 1 | 81 | 20 | 15 | 1.9 | 151042552 | 150742296 | tier1 | In-frame | 11847 | NA | 0.36222 |
| COAD | TCGA-G4-6626-01A | TCGA-G4-6626 | GAS2L3|SND1 | GAS2L3 | SND1 | 12 | 7 | 1 | 1 | 20 | 18 | 18 | 0.34 | 100995531 | 127334882 | tier1 | In-frame | 6961 | NA | 0.3702 |
| LUAD | TCGA-95-7562-01A | TCGA-95-7562 | UBE2D2|SND1 | UBE2D2 | SND1 | 5 | 7 | 1 | 1 | 26 | 28 | 24 | 1.2 | 138941400 | 127714554 | tier4 | In-frame | 19058 | NA | 0 |
| OV | TCGA-24-1470-01A | TCGA-24-1470 | ZFR|SND1 | ZFR | SND1 | 5 | 7 | -1 | 1 | 9 | 6 | 5 | 0.59 | 32444335 | 127527955 | tier1 | In-frame | 20290 | NA | 0 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | C1orf9|SND1 | C1orf9 | SND1 | 1 | 7 | 1 | 1 | 17 | 24 | 21 | 2.6 | 172502637 | 127714554 | tier1 | Out-of-frame | 2621 | NA | 0 |
| UCEC | TCGA-SL-A6J9-01A | TCGA-SL-A6J9 | RAD50|SLC22A4 | RAD50 | SLC22A4 | 5 | 5 | 1 | 1 | 11 | 4 | 4 | 0.52 | 131973915 | 131670411 | tier1 | Out-of-frame | 14161 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | RCCD1|BLM | RCCD1 | BLM | 15 | 15 | 1 | 1 | 83 | 117 | 104 | 1.5 | 91498178 | 91326052 | tier1 | 5UTR-CDS | 14510 | validated | 0 |
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