Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-44-5645-01A | TCGA-44-5645 | RFWD3|STK31 | RFWD3 | STK31 | 16 | 7 | -1 | 1 | 2 | 2 | 1 | 0.63 | 74694830 | 23757100 | tier2 | Out-of-frame | 14605 | non-validated | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | MEF2D|CD55 | MEF2D | CD55 | 1 | 1 | -1 | 1 | 3 | 3 | 3 | 0.048 | 156470278 | 207532891 | tier1 | 5UTR-CDS | 10238 | NA | 0.38439 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | RAB7A|WDR5 | RAB7A | WDR5 | 3 | 9 | 1 | 1 | 3 | 12 | 11 | 0.072 | 128445202 | 137004942 | tier1 | 5UTR-5UTR | 14127 | NA | 0 |
| LUAD | TCGA-78-8660-01A | TCGA-78-8660 | SAFB2|LONP1 | SAFB2 | LONP1 | 19 | 19 | -1 | -1 | 17 | 13 | 9 | 0.37 | 5598804 | 5708414 | tier1 | In-frame | 15275 | NA | 0 |
| TGCT | TCGA-2G-AAFL-01A | TCGA-2G-AAFL | SAFB2|LONP1 | SAFB2 | LONP1 | 19 | 19 | -1 | -1 | 12 | 8 | 8 | 0.37 | 5621320 | 5692219 | tier1 | Out-of-frame | 15274 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | ARPC1A|TRRAP | ARPC1A | TRRAP | 7 | 7 | 1 | 1 | 9 | 13 | 13 | 0.063 | 98931040 | 98579392 | tier1 | Out-of-frame | 1440 | NA | 0.37056 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | ARPC1B|TRRAP | ARPC1B | TRRAP | 7 | 7 | 1 | 1 | 5 | 48 | 43 | 0.063 | 98972404 | 98586388 | tier1 | 5UTR-CDS | 1442 | NA | 0.37396 |
| ACC | TCGA-OR-A5KO-01A | TCGA-OR-A5KO | NT5DC1|SLC35F1 | NT5DC1 | SLC35F1 | 6 | 6 | 1 | 1 | 5 | 2 | 2 | 0.54 | 116439108 | 118588158 | tier2 | Out-of-frame | 11820 | NA | 0.34041 |
| BLCA | TCGA-DK-AA6U-01A | TCGA-DK-AA6U | C19orf2|SLC35F1 | C19orf2 | SLC35F1 | 19 | 6 | 1 | 1 | 7 | 14 | 14 | 0.003 | 30477324 | 118596622 | tier1 | In-frame | 2561 | NA | 0 |
| BRCA | TCGA-A8-A06R-01A | TCGA-A8-A06R | PKIB|SLC35F1 | PKIB | SLC35F1 | 6 | 6 | 1 | 1 | 9 | 27 | 26 | 0.32 | 122954512 | 118556672 | tier2 | 5UTR-CDS | 12908 | NA | 0.35482 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | PEX3|SLC35F1 | PEX3 | SLC35F1 | 6 | 6 | 1 | 1 | 11 | 6 | 5 | 0.46 | 143795993 | 118635191 | tier1 | Out-of-frame | 12632 | NA | 0.34206 |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | BCAS4|PTPN1 | BCAS4 | PTPN1 | 20 | 20 | 1 | 1 | 49 | 37 | 35 | 0.17 | 49458437 | 49194957 | tier1 | In-frame | 2003 | NA | 0.37817 |
| BRCA | TCGA-E2-A15E-06A | TCGA-E2-A15E | BRE|PTPN1 | BRE | PTPN1 | 2 | 20 | 1 | 1 | 6 | 4 | 3 | 100 | 28248287 | 49191054 | tier1 | In-frame | 2214 | non-validated | 0.37918 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | CLPB|PTPN1 | CLPB | PTPN1 | 11 | 20 | -1 | 1 | 39 | 58 | 54 | 0.41 | 72040751 | 49191054 | tier1 | In-frame | 3835 | NA | 0.38371 |
| BRCA | TCGA-3C-AAAU-01A | TCGA-3C-AAAU | G3BP2|PTPN1 | G3BP2 | PTPN1 | 4 | 20 | -1 | 1 | 4 | 7 | 6 | 0.61 | 76649460 | 49177900 | tier1 | 5UTR-CDS | 6878 | NA | 0.38438 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | PARD6B|PTPN1 | PARD6B | PTPN1 | 20 | 20 | 1 | 1 | 2 | 16 | 16 | 0.17 | 49348389 | 49177900 | tier2 | In-frame | 12287 | NA | 0.38192 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | BCAS4|PTPN1 | BCAS4 | PTPN1 | 20 | 20 | 1 | 1 | 3 | 1 | 1 | 0.17 | 49446917 | 49177900 | tier2 | In-frame | 2002 | NA | 0.37817 |
| UCS | TCGA-N8-A4PL-01A | TCGA-N8-A4PL | BCAS4|PTPN1 | BCAS4 | PTPN1 | 20 | 20 | 1 | 1 | 2 | 1 | 1 | 0.17 | 49434819 | 49181506 | tier3 | Out-of-frame | 2004 | NA | 0.37817 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | CDH4|FGF16 | CDH4 | FGF16 | 20 | X | 1 | 1 | 5 | 1 | 1 | 0.45 | 60470103 | 76709648 | tier2 | NA | 3392 | NA | 0.35833 |
| BRCA | TCGA-A2-A3KC-01A | TCGA-A2-A3KC | RNF121|ESRRG | RNF121 | ESRRG | 11 | 1 | 1 | -1 | 4 | 7 | 7 | 1.8 | 71640170 | 217113015 | tier1 | CDS-5UTR | 14739 | validated | 0 |
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