Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-32-1970-01A | TCGA-32-1970 | AC003682.1|CXCL17 | AC003682.1 | CXCL17 | 19 | 19 | -1 | -1 | 59 | 187 | 158 | 0.39 | 58063995 | 42938008 | tier1 | In-frame | 139 | validated | 0.33035 |
| BRCA | TCGA-E2-A1B1-01A | TCGA-E2-A1B1 | PIGU|PTPRT | PIGU | PTPRT | 20 | 20 | -1 | -1 | 8 | 6 | 4 | 0.061 | 33162908 | 40911165 | tier4 | In-frame | 12824 | NA | 0.35129 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | SLMO2|PTPRT | SLMO2 | PTPRT | 20 | 20 | -1 | -1 | 26 | 8 | 8 | 0.34 | 57617754 | 41514572 | tier1 | Out-of-frame | 16326 | NA | 0 |
| SKCM | TCGA-D3-A1Q9-06A | TCGA-D3-A1Q9 | DCUN1D4|PTPRT | DCUN1D4 | PTPRT | 4 | 20 | 1 | -1 | 3 | 1 | 1 | 0.046 | 52777340 | 41101202 | tier2 | Out-of-frame | 4621 | NA | 0.3513 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | GAB2|PTPRT | GAB2 | PTPRT | 11 | 20 | -1 | -1 | 7 | 6 | 6 | 0.8 | 78128692 | 40828028 | tier1 | Out-of-frame | 6888 | NA | 0.38759 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ZSWIM3|PTPRT | ZSWIM3 | PTPRT | 20 | 20 | 1 | -1 | 4 | 1 | 1 | 0.36 | 44486619 | 41514572 | tier1 | Out-of-frame | 20715 | NA | 0 |
| COAD | TCGA-AZ-6607-01A | TCGA-AZ-6607 | SH3RF1|SPOCK3 | SH3RF1 | SPOCK3 | 4 | 4 | -1 | -1 | 15 | 2 | 2 | 0.046 | 170057469 | 167810395 | tier1 | In-frame | 15842 | NA | 0 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | TMOD1|TDRD7 | TMOD1 | TDRD7 | 9 | 9 | 1 | 1 | 2 | 7 | 6 | 1.6 | 100264085 | 100234575 | tier3 | 5UTR-CDS | 18076 | NA | 0 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | STX16|MYT1 | STX16 | MYT1 | 20 | 20 | 1 | 1 | 75 | 29 | 26 | 0.28 | 57227143 | 62821416 | tier1 | CDS-5UTR | 17126 | NA | 0 |
| SKCM | TCGA-XV-AAZV-01A | TCGA-XV-AAZV | PCMTD2|MYT1 | PCMTD2 | MYT1 | 20 | 20 | 1 | 1 | 9 | 2 | 2 | 2.7 | 62891625 | 62850264 | tier1 | In-frame | 12424 | NA | 0.35369 |
| BLCA | TCGA-BL-A13J-01A | TCGA-BL-A13J | PSPC1|MPHOSPH8 | PSPC1 | MPHOSPH8 | 13 | 13 | -1 | 1 | 5 | 3 | 3 | 0.11 | 20315705 | 20233135 | tier1 | Out-of-frame | 13741 | non-validated | 0.36796 |
| BRCA | TCGA-D8-A1XV-01A | TCGA-D8-A1XV | MAGED2|MPHOSPH8 | MAGED2 | MPHOSPH8 | X | 13 | 1 | 1 | 2 | 1 | 1 | 0.34 | 54842440 | 20233807 | tier4 | 3UTR-CDS | 9763 | NA | 0.35885 |
| SARC | TCGA-WK-A8XX-01A | TCGA-WK-A8XX | ZMYM2|MPHOSPH8 | ZMYM2 | MPHOSPH8 | 13 | 13 | 1 | 1 | 12 | 13 | 13 | 0.46 | 20534166 | 20216255 | tier1 | 5UTR-CDS | 20331 | NA | 0 |
| LIHC | TCGA-CC-5260-01A | TCGA-CC-5260 | C19orf2|RYR1 | C19orf2 | RYR1 | 19 | 19 | 1 | 1 | 55 | 33 | 31 | 1.4 | 30433571 | 39038873 | tier1 | Out-of-frame | 2560 | non-validated | 0 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | ZNF134|RYR1 | ZNF134 | RYR1 | 19 | 19 | 1 | 1 | 7 | 4 | 4 | 0.046 | 58125871 | 39033987 | tier4 | 5UTR-CDS | 20362 | NA | 0 |
| UCS | TCGA-N5-A4RJ-01A | TCGA-N5-A4RJ | UBASH3A|SFTA2 | UBASH3A | SFTA2 | 21 | 6 | 1 | -1 | 11 | 3 | 1 | 100 | 43857690 | 30899572 | tier2 | In-frame | 19050 | NA | 0 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | ANKRD28|GRM7 | ANKRD28 | GRM7 | 3 | 3 | -1 | 1 | 11 | 16 | 16 | 0.002 | 15900884 | 7782044 | tier1 | Out-of-frame | 982 | NA | 0.374 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | ARPC4-TTLL3|GRM7 | ARPC4-TTLL3 | GRM7 | 3 | 3 | 1 | 1 | 60 | 15 | 15 | 0.37 | 9845697 | 7188139 | tier1 | NA | 1443 | NA | 0.36693 |
| BRCA | TCGA-BH-A0HP-01A | TCGA-BH-A0HP | CRBN|GRM7 | CRBN | GRM7 | 3 | 3 | -1 | 1 | 6 | 3 | 2 | 1.2 | 3209318 | 6870318 | tier1 | NA | 4188 | NA | 0.36776 |
| UCS | TCGA-NF-A4WX-01A | TCGA-NF-A4WX | SPTLC1|IARS | SPTLC1 | IARS | 9 | 9 | -1 | -1 | 5 | 5 | 5 | 0.026 | 94830248 | 95007353 | tier1 | Out-of-frame | 16802 | NA | 0 |
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