Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | TPX2|EYS | TPX2 | EYS | 20 | 6 | 1 | -1 | 4 | 2 | 2 | 4.8 | 30347982 | 64791895 | tier1 | In-frame | 18524 | NA | 0 |
| PRAD | TCGA-YL-A8SR-01B | TCGA-YL-A8SR | ZNF292|EYS | ZNF292 | EYS | 6 | 6 | 1 | -1 | 17 | 13 | 11 | 0.095 | 87865477 | 66205886 | tier1 | CDS-5UTR | 20441 | NA | 0 |
| SKCM | TCGA-BF-AAP2-01A | TCGA-BF-AAP2 | GFOD1|EYS | GFOD1 | EYS | 6 | 6 | -1 | -1 | 4 | 2 | 2 | 0.95 | 13486870 | 65532715 | tier1 | In-frame | 7036 | NA | 0.35197 |
| THYM | TCGA-X7-A8M0-01A | TCGA-X7-A8M0 | EXOC6|EYS | EXOC6 | EYS | 10 | 6 | 1 | -1 | 2 | 1 | 1 | 0.032 | 94774024 | 64776384 | tier3 | Out-of-frame | 5909 | NA | 0.34559 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | LSAMP|COL4A5 | LSAMP | COL4A5 | 3 | X | -1 | 1 | 9 | 4 | 4 | 0.11 | 115738362 | 107811989 | tier1 | Out-of-frame | 9625 | NA | 0.36712 |
| STAD | TCGA-CD-A48C-01A | TCGA-CD-A48C | NXT2|COL4A5 | NXT2 | COL4A5 | X | X | 1 | 1 | 12 | 121 | 105 | 0.62 | 108784848 | 107929261 | tier1 | In-frame | 11977 | NA | 0.36815 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | PUSL1|AGRN | PUSL1 | AGRN | 1 | 1 | 1 | 1 | 5 | 3 | 3 | 0.027 | 1245231 | 970657 | tier1 | Out-of-frame | 13967 | validated | 0 |
| BRCA | TCGA-AR-A1AQ-01A | TCGA-AR-A1AQ | TMCO4|PLA2G2A | TMCO4 | PLA2G2A | 1 | 1 | -1 | -1 | 2 | 2 | 1 | 0.35 | 20027261 | 20305372 | tier3 | CDS-5UTR | 17909 | NA | 0 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | GNG7|PLA2G2A | GNG7 | PLA2G2A | 19 | 1 | -1 | -1 | 23 | 4 | 4 | 0.51 | 2646222 | 20305372 | tier1 | 5UTR-5UTR | 7236 | NA | 0.35906 |
| HNSC | TCGA-BB-A5HY-01A | TCGA-BB-A5HY | AC005522.1|ZP3 | AC005522.1 | ZP3 | 7 | 7 | 1 | 1 | 30 | 183 | 149 | 0.004 | 76093026 | 76054369 | tier1 | 5UTR-5UTR | 142 | NA | 0.34308 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | PPP1R13B|ZP3 | PPP1R13B | ZP3 | 14 | 7 | -1 | 1 | 3 | 1 | 1 | 0.32 | 104313636 | 76054369 | tier4 | CDS-5UTR | 13369 | NA | 0.36826 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | FAM65A|ZP3 | FAM65A | ZP3 | 16 | 7 | 1 | 1 | 14 | 1 | 1 | 0.022 | 67577372 | 76062787 | tier4 | Out-of-frame | 6198 | NA | 0.34772 |
| BRCA | TCGA-AN-A049-01A | TCGA-AN-A049 | LYSMD2|SLC24A5 | LYSMD2 | SLC24A5 | 15 | 15 | -1 | 1 | 3 | 1 | 1 | 100 | 52029547 | 48426455 | tier2 | Out-of-frame | 9708 | NA | 0.3381 |
| LUAD | TCGA-L9-A8F4-01A | TCGA-L9-A8F4 | GRAMD1A|KRTDAP | GRAMD1A | KRTDAP | 19 | 19 | 1 | -1 | 6 | 8 | 8 | 100 | 35500233 | 35978661 | tier1 | In-frame | 7398 | NA | 0.33538 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | TMEM117|COL25A1 | TMEM117 | COL25A1 | 12 | 4 | 1 | -1 | 6 | 1 | 1 | 0.076 | 44338145 | 109862593 | tier2 | Out-of-frame | 17933 | NA | 0 |
| LUSC | TCGA-43-3920-01A | TCGA-43-3920 | UNK|DPYD | UNK | DPYD | 17 | 1 | 1 | -1 | 43 | 17 | 14 | 2.2 | 73781065 | 98039526 | tier1 | Out-of-frame | 19258 | non-validated | 0 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | BCL10|DPYD | BCL10 | DPYD | 1 | 1 | -1 | -1 | 8 | 1 | 1 | 0.038 | 85741979 | 98015300 | tier3 | Out-of-frame | 2014 | NA | 0.37165 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | KPNA6|RHCE | KPNA6 | RHCE | 1 | 1 | 1 | -1 | 8 | 21 | 20 | 5.8 | 32573735 | 25697031 | tier1 | In-frame | 9107 | NA | 0.36143 |
| ESCA | TCGA-LN-A7HV-01A | TCGA-LN-A7HV | EXOC6B|SLC4A5 | EXOC6B | SLC4A5 | 2 | 2 | -1 | -1 | 3 | 2 | 2 | 0.032 | 72945232 | 74460690 | tier1 | In-frame | 5916 | NA | 0.35426 |
| HNSC | TCGA-UF-A71A-06A | TCGA-UF-A71A | C3orf21|OSTN | C3orf21 | OSTN | 3 | 3 | -1 | 1 | 8 | 2 | 2 | 0.3 | 194991284 | 190936536 | tier1 | In-frame | 2704 | NA | 0 |
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