Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 521 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | ACTG1|THSD4 | ACTG1 | THSD4 | 17 | 15 | -1 | 1 | 2 | 47 | 12 | 2.2 | 79476999 | 72072881 | tier4 | 3UTR-CDS | 365 | NA | 0.37082 |
| OV | TCGA-29-1702-01A | TCGA-29-1702 | INO80|THSD4 | INO80 | THSD4 | 15 | 15 | -1 | 1 | 3 | 5 | 4 | 0.6 | 41313098 | 72020888 | tier1 | In-frame | 8236 | NA | 0.34558 |
| OV | TCGA-24-1428-01A | TCGA-24-1428 | NEO1|THSD4 | NEO1 | THSD4 | 15 | 15 | 1 | 1 | 8 | 17 | 15 | 2.3 | 73470768 | 71704026 | tier1 | In-frame | 11381 | NA | 0.36935 |
| SARC | TCGA-DX-A48L-01A | TCGA-DX-A48L | CALD1|THSD4 | CALD1 | THSD4 | 7 | 15 | 1 | 1 | 2 | 12 | 8 | 0.035 | 134655392 | 72072881 | tier3 | 3UTR-CDS | 2906 | NA | 0.36736 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | S100A6|THSD4 | S100A6 | THSD4 | 1 | 15 | -1 | 1 | 2 | 184 | 160 | 2.7 | 153507075 | 72072881 | tier3 | 3UTR-CDS | 15242 | NA | 0 |
| STAD | TCGA-CG-4301-01A | TCGA-CG-4301 | SAMD12|COL14A1 | SAMD12 | COL14A1 | 8 | 8 | -1 | 1 | 37 | 20 | 15 | 2 | 119634043 | 121209030 | tier1 | In-frame | 15278 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | GRHL2|COL14A1 | GRHL2 | COL14A1 | 8 | 8 | 1 | 1 | 2 | 1 | 1 | 1.2 | 102505017 | 121312971 | tier3 | Out-of-frame | 7425 | NA | 0.36395 |
| CESC | TCGA-C5-A8ZZ-01A | TCGA-C5-A8ZZ | PLEKHN1|KLHL17 | PLEKHN1 | KLHL17 | 1 | 1 | 1 | 1 | 2 | 4 | 3 | 0.22 | 902183 | 900343 | tier3 | Out-of-frame | 13037 | NA | 0.35795 |
| LUAD | TCGA-MP-A4TK-01A | TCGA-MP-A4TK | MKL1|SCGB1C1 | MKL1 | SCGB1C1 | 22 | 11 | -1 | 1 | 7 | 12 | 12 | 0.067 | 40859225 | 194418 | tier1 | Out-of-frame | 10404 | NA | 0.35935 |
| BLCA | TCGA-GV-A40G-01A | TCGA-GV-A40G | ANAPC2|EYS | ANAPC2 | EYS | 9 | 6 | -1 | -1 | 2 | 1 | 1 | 0.99 | 140081933 | 65767620 | tier2 | Out-of-frame | 888 | NA | 0.36703 |
| BLCA | TCGA-GV-A3JW-01A | TCGA-GV-A3JW | KIDINS220|EYS | KIDINS220 | EYS | 2 | 6 | -1 | -1 | 8 | 4 | 3 | 0.066 | 8910800 | 64709076 | tier1 | In-frame | 8924 | NA | 0.38007 |
| BRCA | TCGA-A8-A0AD-01A | TCGA-A8-A0AD | EEF1E1|EYS | EEF1E1 | EYS | 6 | 6 | -1 | -1 | 2 | 3 | 3 | 1.4 | 8095611 | 66205886 | tier2 | NA | 5290 | NA | 0.36738 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | LMBRD1|EYS | LMBRD1 | EYS | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 0.24 | 70490386 | 65767620 | tier4 | In-frame | 9394 | NA | 0.34286 |
| BRCA | TCGA-A8-A0AD-01A | TCGA-A8-A0AD | MED1|EYS | MED1 | EYS | 17 | 6 | -1 | -1 | 4 | 9 | 9 | 0.18 | 37607291 | 66349785 | tier1 | CDS-5UTR | 10151 | NA | 0.36102 |
| BRCA | TCGA-D8-A73W-01A | TCGA-D8-A73W | SNX14|EYS | SNX14 | EYS | 6 | 6 | -1 | -1 | 12 | 9 | 9 | 0.003 | 86303297 | 66205886 | tier2 | CDS-5UTR | 16531 | NA | 0 |
| CESC | TCGA-VS-A8QC-01A | TCGA-VS-A8QC | SOX6|EYS | SOX6 | EYS | 11 | 6 | -1 | -1 | 3 | 1 | 1 | 0.28 | 16205432 | 65016975 | tier2 | In-frame | 16626 | NA | 0 |
| LGG | TCGA-TM-A7CF-02A | TCGA-TM-A7CF | C6orf204|EYS | C6orf204 | EYS | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 2.9 | 118886692 | 65303202 | tier3 | In-frame | 2763 | non-validated | 0 |
| LIHC | TCGA-CC-A8HV-01A | TCGA-CC-A8HV | LYRM4|EYS | LYRM4 | EYS | 6 | 6 | -1 | -1 | 2 | 2 | 1 | 1.9 | 5260881 | 66045039 | tier3 | Out-of-frame | 9702 | NA | 0.33705 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | XPO5|EYS | XPO5 | EYS | 6 | 6 | -1 | -1 | 3 | 3 | 3 | 0.014 | 43514308 | 64436573 | tier1 | Out-of-frame | 19963 | NA | 0 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | SESN1|EYS | SESN1 | EYS | 6 | 6 | -1 | -1 | 6 | 3 | 3 | 0.38 | 109414998 | 64498142 | tier1 | In-frame | 15678 | non-validated | 0 |
|
Showing page 521 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.