Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | MAGI1|MITF | MAGI1 | MITF | 3 | 3 | -1 | 1 | 18 | 8 | 8 | 2.9 | 66023671 | 69998202 | tier1 | Out-of-frame | 9768 | NA | 0.38087 |
| BRCA | TCGA-A7-A6VV-01A | TCGA-A7-A6VV | TM9SF3|SLIT1 | TM9SF3 | SLIT1 | 10 | 10 | -1 | -1 | 23 | 37 | 36 | 0.5 | 98346491 | 98808875 | tier1 | Out-of-frame | 17874 | NA | 0 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | PFKFB3|AKR1C1 | PFKFB3 | AKR1C1 | 10 | 10 | 1 | 1 | 4 | 3 | 3 | 0.013 | 6268328 | 4950543 | tier1 | CDS-5UTR | 12640 | NA | 0.3472 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | AFAP1|AKR1C1 | AFAP1 | AKR1C1 | 4 | 10 | -1 | 1 | 8 | 1 | 1 | 0.94 | 7774547 | 4975429 | tier2 | CDS-5UTR | 572 | validated | 0.37047 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | CCDC88B|AKR1C1 | CCDC88B | AKR1C1 | 11 | 10 | 1 | 1 | 16 | 9 | 9 | 0.59 | 64110797 | 4950543 | tier1 | CDS-5UTR | 3182 | NA | 0.35526 |
| ACC | TCGA-OR-A5KY-01A | TCGA-OR-A5KY | LRRC68|BCAM | LRRC68 | BCAM | 19 | 19 | 1 | 1 | 47 | 20 | 20 | 0.006 | 45596785 | 45314482 | tier1 | In-frame | 9584 | NA | 0.35768 |
| CESC | TCGA-EA-A556-01A | TCGA-EA-A556 | TEX2|BCAM | TEX2 | BCAM | 17 | 19 | -1 | 1 | 22 | 8 | 5 | 1.5 | 62248460 | 45314482 | tier1 | In-frame | 17684 | NA | 0 |
| BLCA | TCGA-DK-A3IV-01A | TCGA-DK-A3IV | VPS41|NPSR1 | VPS41 | NPSR1 | 7 | 7 | -1 | 1 | 16 | 4 | 4 | 0.33 | 38908746 | 34851382 | tier1 | In-frame | 19651 | NA | 0 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | RFX2|EPOR | RFX2 | EPOR | 19 | 19 | -1 | -1 | 26 | 14 | 13 | 0.36 | 6110404 | 11489454 | tier1 | 5UTR-CDS | 14609 | NA | 0 |
| BRCA | TCGA-AC-A2BK-01A | TCGA-AC-A2BK | MIRLET7BHG|COL4A1 | MIRLET7BHG | COL4A1 | 22 | 13 | 1 | -1 | 12 | 10 | 9 | 0.087 | 46449800 | 110895081 | tier1 | 5UTR-CDS | 10388 | validated | 0.36326 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | UGGT2|COL4A1 | UGGT2 | COL4A1 | 13 | 13 | -1 | -1 | 3 | 2 | 2 | 0.092 | 96665561 | 110895081 | tier1 | In-frame | 19195 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | PDS5B|COL4A1 | PDS5B | COL4A1 | 13 | 13 | 1 | -1 | 29 | 66 | 60 | 0.14 | 33160730 | 110895081 | tier1 | 5UTR-CDS | 12568 | NA | 0.36679 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | MTUS2|SIRT7 | MTUS2 | SIRT7 | 13 | 17 | 1 | -1 | 2 | 6 | 5 | 1.1 | 30054501 | 79875843 | tier2 | In-frame | 10850 | NA | 0.35209 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | HHIPL2|TLR5 | HHIPL2 | TLR5 | 1 | 1 | -1 | -1 | 6 | 1 | 1 | 0.37 | 222700311 | 223310605 | tier3 | CDS-5UTR | 7746 | validated | 0.36387 |
| HNSC | TCGA-CV-A460-01A | TCGA-CV-A460 | ACTG1|USP7 | ACTG1 | USP7 | 17 | 16 | -1 | -1 | 2 | 25 | 1 | 1.3 | 79476999 | 9030586 | tier3 | NA | 366 | NA | 0.37435 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | AGFG1|TET3 | AGFG1 | TET3 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 0.79 | 228356356 | 74320029 | tier2 | In-frame | 644 | NA | 0.36419 |
| KICH | TCGA-KL-8339-01A | TCGA-KL-8339 | HECTD1|DHRS4L2 | HECTD1 | DHRS4L2 | 14 | 14 | -1 | 1 | 7 | 5 | 5 | 1.5 | 31614013 | 24459391 | tier1 | Out-of-frame | 7678 | NA | 0.3662 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | MKLN1|AMTN | MKLN1 | AMTN | 7 | 4 | 1 | 1 | 10 | 5 | 5 | 0.41 | 130887733 | 71394440 | tier1 | NA | 10420 | NA | 0.34435 |
| CESC | TCGA-VS-A9UR-01A | TCGA-VS-A9UR | ITM2C|THSD4 | ITM2C | THSD4 | 2 | 15 | 1 | 1 | 2 | 1 | 1 | 0.19 | 231743962 | 72072881 | tier4 | 3UTR-CDS | 8430 | NA | 0.35503 |
| CESC | TCGA-EK-A2RC-01A | TCGA-EK-A2RC | KRT13|THSD4 | KRT13 | THSD4 | 17 | 15 | -1 | 1 | 2 | 59 | 40 | 0.16 | 39657233 | 72072881 | tier3 | 3UTR-CDS | 9127 | NA | 0.35573 |
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