Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | CDC14B|AUH | CDC14B | AUH | 9 | 9 | -1 | -1 | 46 | 46 | 45 | 0.31 | 99381501 | 94060358 | tier1 | In-frame | 3317 | NA | 0.3513 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | DUSP12|CR2 | DUSP12 | CR2 | 1 | 1 | 1 | 1 | 17 | 9 | 9 | 0.66 | 161719935 | 207658809 | tier1 | In-frame | 5177 | NA | 0.36886 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | DUSP12|NAV1 | DUSP12 | NAV1 | 1 | 1 | 1 | 1 | 6 | 4 | 3 | 0.59 | 161719935 | 201749549 | tier1 | In-frame | 5178 | NA | 0.36221 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | IL12RB2|PDE4B | IL12RB2 | PDE4B | 1 | 1 | 1 | 1 | 11 | 14 | 14 | 0.65 | 67796493 | 66837996 | tier1 | Out-of-frame | 8157 | NA | 0.36135 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | IL12RB2|DAB1 | IL12RB2 | DAB1 | 1 | 1 | 1 | -1 | 107 | 88 | 75 | 2.9 | 67845806 | 57611102 | tier1 | In-frame | 8156 | NA | 0.37742 |
| SKCM | TCGA-ER-A2NG-06A | TCGA-ER-A2NG | IL12RB2|SDC3 | IL12RB2 | SDC3 | 1 | 1 | 1 | -1 | 15 | 10 | 9 | 0.92 | 67816772 | 31350012 | tier1 | In-frame | 8158 | NA | 0.37023 |
| PRAD | TCGA-G9-6333-01A | TCGA-G9-6333 | GSK3B|ATP11B | GSK3B | ATP11B | 3 | 3 | -1 | 1 | 11 | 12 | 10 | 0.17 | 119720893 | 182631649 | tier4 | In-frame | 7481 | NA | 0.38149 |
| LUAD | TCGA-38-4631-01A | TCGA-38-4631 | GSK3B|COL8A1 | GSK3B | COL8A1 | 3 | 3 | -1 | 1 | 4 | 2 | 2 | 0.45 | 119642220 | 99509524 | tier1 | CDS-5UTR | 7484 | NA | 0.38288 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | GSK3B|PLA1A | GSK3B | PLA1A | 3 | 3 | -1 | 1 | 4 | 3 | 2 | 0.49 | 119624602 | 119347548 | tier1 | Out-of-frame | 7489 | NA | 0.37989 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | GSK3B|FSTL1 | GSK3B | FSTL1 | 3 | 3 | -1 | -1 | 27 | 24 | 24 | 0.039 | 119720893 | 120134874 | tier1 | In-frame | 7485 | non-validated | 0.381 |
| PCPG | TCGA-P7-A5NX-01A | TCGA-P7-A5NX | GSK3B|WNK2 | GSK3B | WNK2 | 3 | 9 | -1 | 1 | 5 | 6 | 4 | 2.1 | 119812194 | 96070610 | tier1 | In-frame | 7493 | NA | 0.38299 |
| BRCA | TCGA-BH-A0W7-01A | TCGA-BH-A0W7 | GSK3B|GPR156 | GSK3B | GPR156 | 3 | 3 | -1 | -1 | 3 | 4 | 4 | 4.3 | 119562102 | 119963325 | tier1 | CDS-5UTR | 7486 | NA | 0.38152 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | GSK3B|C3orf15 | GSK3B | C3orf15 | 3 | 3 | -1 | 1 | 3 | 3 | 3 | 0.029 | 119812194 | 119426251 | tier1 | Out-of-frame | 7483 | non-validated | 0 |
| BRCA | TCGA-A2-A04Y-01A | TCGA-A2-A04Y | GSK3B|LSAMP | GSK3B | LSAMP | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.14 | 119624602 | 116163802 | tier2 | Out-of-frame | 7487 | NA | 0.3817 |
| PRAD | TCGA-HC-A4ZV-01A | TCGA-HC-A4ZV | GSK3B|LSAMP | GSK3B | LSAMP | 3 | 3 | -1 | -1 | 4 | 4 | 3 | 0.14 | 119666115 | 115738487 | tier1 | Out-of-frame | 7488 | NA | 0.3817 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | GSK3B|SEMA5B | GSK3B | SEMA5B | 3 | 3 | -1 | -1 | 25 | 21 | 19 | 0.38 | 119582266 | 122680148 | tier1 | CDS-5UTR | 7491 | NA | 0.38151 |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | GSK3B|TSC22D2 | GSK3B | TSC22D2 | 3 | 3 | -1 | 1 | 4 | 3 | 2 | 0.009 | 119624602 | 150174863 | tier1 | Out-of-frame | 7492 | NA | 0.37906 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | GSK3B|BEST3 | GSK3B | BEST3 | 3 | 12 | -1 | -1 | 5 | 2 | 2 | 0.97 | 119720893 | 70049593 | tier2 | Out-of-frame | 7482 | NA | 0.38099 |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | GSK3B|RASSF2 | GSK3B | RASSF2 | 3 | 20 | -1 | -1 | 7 | 5 | 5 | 0.12 | 119812194 | 4781708 | tier1 | CDS-5UTR | 7490 | NA | 0.38122 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ITGB5|HDAC9 | ITGB5 | HDAC9 | 3 | 7 | -1 | 1 | 4 | 7 | 5 | 0.73 | 124487860 | 18535885 | tier1 | CDS-5UTR | 8405 | NA | 0.37606 |
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