TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-GD-A2C5-01A	TCGA-GD-A2C5	NEDD4\|GABRA5	NEDD4	GABRA5	15	15	-1	1	8	8	6	0.84	56285709	27113876	tier1	CDS-5UTR	11331	non-validated	0.37849
LGG	TCGA-DU-A7T6-01A	TCGA-DU-A7T6	CEP164\|BACE1	CEP164	BACE1	11	11	1	-1	8	3	2	2	117206396	117166063	tier1	5UTR-CDS	3537	NA	0.36804
SARC	TCGA-DX-A3LS-01A	TCGA-DX-A3LS	SEC16A\|RXRA	SEC16A	RXRA	9	9	-1	1	19	6	6	0.76	139353586	137293478	tier1	Out-of-frame	15499	validated	0
SKCM	TCGA-EE-A2A1-06A	TCGA-EE-A2A1	VAV2\|RXRA	VAV2	RXRA	9	9	-1	1	4	2	2	0.44	136857197	137293478	tier1	Out-of-frame	19523	NA	0
BLCA	TCGA-XF-A9SK-01A	TCGA-XF-A9SK	GRB7\|CD300E	GRB7	CD300E	17	17	1	-1	2	1	1	3.4	37901237	72610172	tier3	Out-of-frame	7413	NA	0.38261
BLCA	TCGA-XF-A9SZ-01A	TCGA-XF-A9SZ	EP400\|TMPRSS12	EP400	TMPRSS12	12	12	1	1	11	4	4	0.035	132434581	51237625	tier1	5UTR-CDS	5624	NA	0.36977
BRCA	TCGA-AC-A5XU-01A	TCGA-AC-A5XU	WIZ\|CYP4F3	WIZ	CYP4F3	19	19	-1	1	2	1	1	0.35	15558914	15752225	tier3	CDS-5UTR	19880	NA	0
PRAD	TCGA-ZG-A9L2-01A	TCGA-ZG-A9L2	IP6K1\|HYAL3	IP6K1	HYAL3	3	3	-1	-1	17	8	7	0.088	49823787	50330946	tier1	5UTR-CDS	8284	NA	0.32384
LUAD	TCGA-91-6848-01A	TCGA-91-6848	KCTD10\|TPCN1	KCTD10	TPCN1	12	12	-1	1	4	3	2	0.29	109907320	113716577	tier1	Out-of-frame	8611	NA	0.33856
BLCA	TCGA-HQ-A2OF-01A	TCGA-HQ-A2OF	SOCS7\|MAPT	SOCS7	MAPT	17	17	1	1	53	44	41	0.52	36508915	44101322	tier1	Out-of-frame	16580	NA	0
BRCA	TCGA-A8-A07B-01A	TCGA-A8-A07B	RAPGEFL1\|MAPT	RAPGEFL1	MAPT	17	17	1	1	3	4	4	0.077	38340601	44101322	tier1	In-frame	14304	non-validated	0
BLCA	TCGA-DK-A6AV-01A	TCGA-DK-A6AV	TMCO7\|FGF3	TMCO7	FGF3	16	11	1	-1	4	3	2	0.15	68964198	69631191	tier1	In-frame	17914	NA	0
STAD	TCGA-BR-4363-01A	TCGA-BR-4363	TRMU\|PPARA	TRMU	PPARA	22	22	1	1	11	5	5	0.057	46739265	46584620	tier1	NA	18711	NA	0
BRCA	TCGA-A2-A1G1-01A	TCGA-A2-A1G1	PPP6R2\|EMID1	PPP6R2	EMID1	22	22	1	1	15	7	7	0.089	50845304	29621122	tier1	Out-of-frame	13449	NA	0.34083
SKCM	TCGA-D3-A8GJ-06A	TCGA-D3-A8GJ	MTMR3\|EMID1	MTMR3	EMID1	22	22	1	1	10	18	17	0.2	30279348	29610915	tier1	5UTR-CDS	10824	NA	0.34932
BLCA	TCGA-ZF-A9RL-01A	TCGA-ZF-A9RL	USP31\|RHD	USP31	RHD	16	1	-1	1	25	4	4	1.1	23113640	25611064	tier1	In-frame	19349	NA	0
LIHC	TCGA-FV-A3R3-01A	TCGA-FV-A3R3	SYF2\|RHD	SYF2	RHD	1	1	-1	1	10	2	2	0.47	25558595	25611064	tier1	Out-of-frame	17230	non-validated	0
LUAD	TCGA-86-8279-01A	TCGA-86-8279	KIAA1429\|PNLIPRP1	KIAA1429	PNLIPRP1	8	10	-1	1	6	7	6	0.35	95556055	118350642	tier4	Out-of-frame	8866	NA	0.33812
UCEC	TCGA-AJ-A3EM-01A	TCGA-AJ-A3EM	PLXNB2\|TMPRSS6	PLXNB2	TMPRSS6	22	22	-1	-1	65	69	66	0.74	50733148	37499458	tier1	5UTR-5UTR	13076	NA	0.37673
HNSC	TCGA-CV-5432-01A	TCGA-CV-5432	CGGBP1\|MITF	CGGBP1	MITF	3	3	-1	1	2	1	1	0.91	88190120	69998202	tier3	5UTR-CDS	3597	non-validated	0.37132

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