Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | RLF|RTN4RL1 | RLF | RTN4RL1 | 1 | 17 | 1 | -1 | 2 | 5 | 4 | 0.7 | 40627308 | 1841102 | tier2 | Out-of-frame | 14707 | NA | 0 |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | PCID2|ATP4B | PCID2 | ATP4B | 13 | 13 | -1 | -1 | 540 | 1259 | 995 | 0.42 | 113862913 | 114309257 | tier1 | Out-of-frame | 12403 | NA | 0.35646 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | MSN|HTR3D | MSN | HTR3D | X | 3 | 1 | 1 | 13 | 11 | 1 | 0.067 | 64887720 | 183755809 | tier3 | In-frame | 10745 | NA | 0.37597 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | OSBPL9|AGBL4 | OSBPL9 | AGBL4 | 1 | 1 | 1 | -1 | 15 | 9 | 5 | 0.16 | 52117713 | 49056657 | tier1 | In-frame | 12096 | NA | 0.35607 |
| BLCA | TCGA-CU-A3QU-01A | TCGA-CU-A3QU | ZNF267|AGBL4 | ZNF267 | AGBL4 | 16 | 1 | 1 | -1 | 7 | 2 | 2 | 5.6 | 31885290 | 49332902 | tier1 | In-frame | 20428 | NA | 0 |
| BRCA | TCGA-C8-A26Z-01A | TCGA-C8-A26Z | FUT8|AGBL4 | FUT8 | AGBL4 | 14 | 1 | 1 | -1 | 10 | 6 | 5 | 0.73 | 65879932 | 49711536 | tier1 | 5UTR-CDS | 6832 | NA | 0.34426 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | DTL|AGBL4 | DTL | AGBL4 | 1 | 1 | 1 | -1 | 2 | 3 | 3 | 0.015 | 212220759 | 50317190 | tier3 | In-frame | 5151 | NA | 0.34867 |
| PRAD | TCGA-ZG-A8QW-01A | TCGA-ZG-A8QW | VPS26A|AGBL4 | VPS26A | AGBL4 | 10 | 1 | 1 | -1 | 3 | 3 | 2 | 1.6 | 70917967 | 49511472 | tier1 | In-frame | 19638 | NA | 0 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | RANBP3|PIP5K1C | RANBP3 | PIP5K1C | 19 | 19 | -1 | -1 | 3 | 4 | 4 | 0.17 | 5978072 | 3667351 | tier1 | In-frame | 14259 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | MED21|PIP5K1C | MED21 | PIP5K1C | 12 | 19 | 1 | -1 | 5 | 15 | 13 | 1.1 | 27175554 | 3661999 | tier1 | In-frame | 10209 | NA | 0.36614 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | MAGED1|CYP4F2 | MAGED1 | CYP4F2 | X | 19 | 1 | -1 | 19 | 12 | 9 | 0.24 | 51643392 | 16003392 | tier1 | CDS-5UTR | 9762 | NA | 0.36102 |
| BLCA | TCGA-XF-A9T0-01A | TCGA-XF-A9T0 | CFDP1|WWOX | CFDP1 | WWOX | 16 | 16 | -1 | 1 | 85 | 81 | 77 | 100 | 75428988 | 79245505 | tier1 | Out-of-frame | 3590 | NA | 0.37675 |
| BLCA | TCGA-BT-A20V-01A | TCGA-BT-A20V | VAC14|WWOX | VAC14 | WWOX | 16 | 16 | -1 | 1 | 31 | 33 | 33 | 0.52 | 70765398 | 79245505 | tier1 | Out-of-frame | 19495 | non-validated | 0 |
| LUAD | TCGA-49-6744-01A | TCGA-49-6744 | PARD3B|WWOX | PARD3B | WWOX | 2 | 16 | 1 | 1 | 5 | 14 | 13 | 0.4 | 205990461 | 79245505 | tier1 | Out-of-frame | 12285 | NA | 0.37825 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | AFF1|WWOX | AFF1 | WWOX | 4 | 16 | 1 | 1 | 7 | 2 | 2 | 0.46 | 88036451 | 79245505 | tier1 | Out-of-frame | 590 | NA | 0.37374 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | SNAPC5|BPIFB4 | SNAPC5 | BPIFB4 | 15 | 20 | -1 | 1 | 23 | 24 | 23 | 100 | 66789980 | 31692616 | tier1 | In-frame | 16484 | NA | 0 |
| OV | TCGA-13-0923-01A | TCGA-13-0923 | DPM1|CYP4F12 | DPM1 | CYP4F12 | 20 | 19 | -1 | 1 | 16 | 6 | 4 | 0.29 | 49571723 | 15807240 | tier1 | In-frame | 5075 | NA | 0.35003 |
| BRCA | TCGA-AR-A0TW-01A | TCGA-AR-A0TW | MED23|KLHL32 | MED23 | KLHL32 | 6 | 6 | -1 | 1 | 50 | 20 | 20 | 0.73 | 131939547 | 97489368 | tier1 | In-frame | 10212 | NA | 0.35709 |
| OV | TCGA-24-1558-01A | TCGA-24-1558 | ANKRD11|KLHL32 | ANKRD11 | KLHL32 | 16 | 6 | -1 | 1 | 18 | 10 | 10 | 0.11 | 89556653 | 97489368 | tier1 | 5UTR-CDS | 952 | non-validated | 0.38026 |
| SKCM | TCGA-FS-A1Z0-06A | TCGA-FS-A1Z0 | PNLDC1|KLHL32 | PNLDC1 | KLHL32 | 6 | 6 | 1 | 1 | 5 | 4 | 4 | 0.006 | 160225669 | 97489368 | tier1 | Out-of-frame | 13120 | NA | 0.34901 |
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