Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 517 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | MEF2A|SV2B | MEF2A | SV2B | 15 | 15 | 1 | 1 | 16 | 6 | 6 | 0.18 | 100230633 | 91795049 | tier1 | Out-of-frame | 10235 | NA | 0.37529 |
| LUSC | TCGA-85-A4CN-01A | TCGA-85-A4CN | NPLOC4|PDE6G | NPLOC4 | PDE6G | 17 | 17 | -1 | -1 | 6 | 5 | 5 | 0.68 | 79567367 | 79618715 | tier1 | Out-of-frame | 11698 | NA | 0.36982 |
| LUSC | TCGA-NC-A5HD-01A | TCGA-NC-A5HD | NPLOC4|PDE6G | NPLOC4 | PDE6G | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.68 | 79577236 | 79618715 | tier3 | Out-of-frame | 11699 | NA | 0.36982 |
| SARC | TCGA-QQ-A8VH-01A | TCGA-QQ-A8VH | CCDC40|PRKG1 | CCDC40 | PRKG1 | 17 | 10 | 1 | 1 | 4 | 1 | 1 | 1.1 | 78011985 | 54048486 | tier2 | Out-of-frame | 3139 | NA | 0.37917 |
| PCPG | TCGA-QR-A70P-01A | TCGA-QR-A70P | CIC|DLK1 | CIC | DLK1 | 19 | 14 | 1 | 1 | 2 | 5 | 1 | 0.008 | 42798456 | 101193333 | tier4 | NA | 3729 | NA | 0.359 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | NPLOC4|P4HB | NPLOC4 | P4HB | 17 | 17 | -1 | -1 | 54 | 61 | 52 | 1.7 | 79596751 | 79805223 | tier4 | In-frame | 11697 | non-validated | 0.36511 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | FAM73B|P4HB | FAM73B | P4HB | 9 | 17 | 1 | -1 | 16 | 33 | 27 | 0.097 | 131825910 | 79805223 | tier1 | In-frame | 6205 | NA | 0.36374 |
| BRCA | TCGA-E2-A1LG-01A | TCGA-E2-A1LG | TRAPPC10|BRWD1 | TRAPPC10 | BRWD1 | 21 | 21 | 1 | -1 | 30 | 59 | 54 | 0.26 | 45432441 | 40630598 | tier1 | In-frame | 18567 | validated | 0 |
| LGG | TCGA-DU-6406-01A | TCGA-DU-6406 | TTC3|BRWD1 | TTC3 | BRWD1 | 21 | 21 | 1 | -1 | 14 | 8 | 6 | 0.11 | 38498443 | 40636611 | tier1 | Out-of-frame | 18845 | NA | 0 |
| LIHC | TCGA-BC-A216-01A | TCGA-BC-A216 | ATOH8|LYG2 | ATOH8 | LYG2 | 2 | 2 | 1 | -1 | 2 | 3 | 2 | 100 | 85991305 | 99863283 | tier2 | Out-of-frame | 1658 | non-validated | 0.34398 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | FRS2|NRG3 | FRS2 | NRG3 | 12 | 10 | 1 | 1 | 8 | 6 | 5 | 0.22 | 69925836 | 84498333 | tier1 | 5UTR-CDS | 6767 | NA | 0.3795 |
| ESCA | TCGA-L5-A4OO-01A | TCGA-L5-A4OO | MAP7|NRG3 | MAP7 | NRG3 | 6 | 10 | -1 | 1 | 3 | 2 | 2 | 0.12 | 136871480 | 84118495 | tier1 | In-frame | 9923 | NA | 0.36314 |
| PRAD | TCGA-G9-6364-01A | TCGA-G9-6364 | FYTTD1|IFIT1 | FYTTD1 | IFIT1 | 3 | 10 | 1 | 1 | 12 | 11 | 11 | 0.36 | 197476945 | 91162038 | tier1 | Out-of-frame | 6857 | NA | 0.35905 |
| STAD | TCGA-D7-A6EZ-01A | TCGA-D7-A6EZ | TSPAN14|IFIT1 | TSPAN14 | IFIT1 | 10 | 10 | 1 | 1 | 8 | 24 | 23 | 0.56 | 82228443 | 91162038 | tier1 | 5UTR-CDS | 18789 | NA | 0 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | DYNC2H1|KCNQ5 | DYNC2H1 | KCNQ5 | 11 | 6 | 1 | 1 | 3 | 1 | 1 | 0.27 | 103339433 | 73787045 | tier4 | Out-of-frame | 5219 | NA | 0.36578 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | FILIP1|KCNQ5 | FILIP1 | KCNQ5 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 1.1 | 76124413 | 73814980 | tier1 | In-frame | 6541 | NA | 0.36853 |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | PPP1R16A|GPR172A | PPP1R16A | GPR172A | 8 | 8 | 1 | 1 | 17 | 7 | 7 | 0.21 | 145715595 | 145583775 | tier1 | NA | 13376 | NA | 0.36024 |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | TFDP1|LAMP1 | TFDP1 | LAMP1 | 13 | 13 | 1 | 1 | 135 | 238 | 218 | 0.23 | 114240164 | 113973784 | tier1 | Out-of-frame | 17700 | NA | 0 |
| BLCA | TCGA-GU-A42P-01A | TCGA-GU-A42P | ABR|RTN4RL1 | ABR | RTN4RL1 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 0.18 | 970317 | 1841102 | tier1 | Out-of-frame | 128 | NA | 0.35725 |
| BRCA | TCGA-OL-A5RW-01A | TCGA-OL-A5RW | VPS53|RTN4RL1 | VPS53 | RTN4RL1 | 17 | 17 | -1 | -1 | 2 | 9 | 8 | 0.42 | 600658 | 1841102 | tier2 | Out-of-frame | 19664 | NA | 0 |
|
Showing page 517 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.