Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-QC-A6FX-01A | TCGA-QC-A6FX | TSEN54|NOTUM | TSEN54 | NOTUM | 17 | 17 | 1 | -1 | 10 | 2 | 1 | 0.004 | 73515128 | 79916269 | tier2 | In-frame | 18766 | NA | 0 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | AGAP1|SP140L | AGAP1 | SP140L | 2 | 2 | 1 | 1 | 2 | 6 | 6 | 0.23 | 236403493 | 231261472 | tier2 | Out-of-frame | 619 | NA | 0.3639 |
| BLCA | TCGA-ZF-AA53-01A | TCGA-ZF-AA53 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 1.4 | 245319985 | 246093239 | tier4 | In-frame | 8997 | NA | 0.35543 |
| GBM | TCGA-14-1402-02A | TCGA-14-1402 | XRN1|SMYD3 | XRN1 | SMYD3 | 3 | 1 | -1 | -1 | 18 | 8 | 7 | 0.56 | 142166712 | 246093239 | tier1 | In-frame | 19991 | non-validated | 0 |
| HNSC | TCGA-CR-7389-01A | TCGA-CR-7389 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 2 | 3 | 3 | 1.4 | 245319985 | 246093239 | tier3 | In-frame | 8992 | NA | 0.35543 |
| HNSC | TCGA-IQ-A61O-01A | TCGA-IQ-A61O | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 3 | 3 | 3 | 1.4 | 245319985 | 246093239 | tier1 | In-frame | 8994 | NA | 0.35543 |
| LUSC | TCGA-22-5474-01A | TCGA-22-5474 | COBLL1|SMYD3 | COBLL1 | SMYD3 | 2 | 1 | -1 | -1 | 3 | 3 | 3 | 0.042 | 165697666 | 246093239 | tier1 | Out-of-frame | 3966 | NA | 0.35603 |
| LUSC | TCGA-22-5479-01A | TCGA-22-5479 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 2 | 2 | 2 | 1.4 | 245319985 | 246093239 | tier4 | In-frame | 8988 | NA | 0.35543 |
| LUSC | TCGA-56-8083-01A | TCGA-56-8083 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 3 | 2 | 2 | 1.4 | 245319985 | 246093239 | tier1 | In-frame | 8989 | NA | 0.35543 |
| LUSC | TCGA-63-A5MB-01A | TCGA-63-A5MB | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 3 | 4 | 1 | 1.4 | 245772830 | 246093239 | tier4 | In-frame | 8990 | NA | 0.35543 |
| LUSC | TCGA-85-8481-01A | TCGA-85-8481 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1.4 | 245530669 | 245927451 | tier4 | Out-of-frame | 8991 | NA | 0.35543 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | CNST|SMYD3 | CNST | SMYD3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 3.4 | 246729965 | 246518396 | tier3 | 5UTR-5UTR | 3947 | NA | 0.3509 |
| PRAD | TCGA-TP-A8TT-01A | TCGA-TP-A8TT | MSI2|SMYD3 | MSI2 | SMYD3 | 17 | 1 | 1 | -1 | 5 | 2 | 2 | 100 | 55607085 | 246518396 | tier1 | CDS-5UTR | 10723 | NA | 0.35709 |
| SARC | TCGA-DX-AB2W-01A | TCGA-DX-AB2W | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 2 | 3 | 3 | 1.4 | 245319985 | 246027188 | tier4 | In-frame | 8993 | NA | 0.35543 |
| SARC | TCGA-X6-A7WC-01A | TCGA-X6-A7WC | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 1.4 | 245583047 | 245927451 | tier4 | In-frame | 8996 | NA | 0.35543 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | STX6|SMYD3 | STX6 | SMYD3 | 1 | 1 | -1 | -1 | 12 | 4 | 3 | 0.93 | 180991775 | 246093239 | tier4 | Out-of-frame | 17139 | NA | 0 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | TBC1D22A|SMYD3 | TBC1D22A | SMYD3 | 22 | 1 | 1 | -1 | 3 | 5 | 5 | 0.72 | 47274619 | 246093239 | tier1 | In-frame | 17478 | NA | 0 |
| SKCM | TCGA-DA-A1I7-06A | TCGA-DA-A1I7 | ZMYM4|SMYD3 | ZMYM4 | SMYD3 | 1 | 1 | 1 | -1 | 14 | 15 | 15 | 1.3 | 35827390 | 246093239 | tier1 | In-frame | 20334 | NA | 0 |
| STAD | TCGA-BR-4369-01A | TCGA-BR-4369 | ZNF695|SMYD3 | ZNF695 | SMYD3 | 1 | 1 | -1 | -1 | 4 | 8 | 7 | 0.64 | 247171208 | 246093239 | tier1 | In-frame | 20626 | NA | 0 |
| UCS | TCGA-NA-A4R0-01A | TCGA-NA-A4R0 | KIF26B|SMYD3 | KIF26B | SMYD3 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1.4 | 245319985 | 246027188 | tier3 | In-frame | 8995 | NA | 0.35543 |
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