Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | GRINA|MUC6 | GRINA | MUC6 | 8 | 11 | 1 | -1 | 2 | 1 | 1 | 0.56 | 145067583 | 1018770 | tier3 | 3UTR-CDS | 7456 | NA | 0.34964 |
| CESC | TCGA-MU-A51Y-01A | TCGA-MU-A51Y | CTNND1|SLC22A10 | CTNND1 | SLC22A10 | 11 | 11 | 1 | 1 | 12 | 7 | 6 | 0.51 | 57529518 | 62934337 | tier1 | 5UTR-5UTR | 4374 | NA | 0.38195 |
| LGG | TCGA-HT-7470-01A | TCGA-HT-7470 | DIAPH2|F8 | DIAPH2 | F8 | X | X | 1 | -1 | 7 | 4 | 4 | 0.87 | 96013257 | 154066027 | tier1 | In-frame | 4818 | NA | 0.3681 |
| LIHC | TCGA-K7-AAU7-01A | TCGA-K7-AAU7 | MECP2|F8 | MECP2 | F8 | X | X | -1 | -1 | 6 | 2 | 2 | 0.28 | 153357642 | 154185446 | tier1 | Out-of-frame | 10145 | NA | 0.3756 |
| SKCM | TCGA-FS-A1Z4-06A | TCGA-FS-A1Z4 | ODF2L|F8 | ODF2L | F8 | 1 | X | -1 | -1 | 6 | 6 | 4 | 0.53 | 86861716 | 154159951 | tier1 | 5UTR-CDS | 12004 | NA | 0.37612 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 4 | 1 | 1 | 0.98 | 90934105 | 90760671 | tier3 | Out-of-frame | 8317 | NA | 0.38447 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 8 | 6 | 6 | 0.98 | 90934105 | 90760671 | tier1 | Out-of-frame | 8320 | NA | 0.38447 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 3 | 25 | 25 | 0.98 | 90934105 | 90760671 | tier1 | Out-of-frame | 8318 | validated | 0.38447 |
| STAD | TCGA-CG-4442-01A | TCGA-CG-4442 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 2 | 3 | 3 | 0.98 | 90982631 | 90760671 | tier3 | In-frame | 8319 | non-validated | 0.38447 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 8 | 4 | 2 | 0.98 | 90934105 | 90744690 | tier1 | CDS-5UTR | 8316 | NA | 0.38447 |
| CESC | TCGA-UC-A7PF-01A | TCGA-UC-A7PF | RALY|SLC24A3 | RALY | SLC24A3 | 20 | 20 | 1 | 1 | 7 | 5 | 1 | 0.88 | 32581937 | 19560644 | tier4 | 5UTR-CDS | 14244 | NA | 0 |
| HNSC | TCGA-CV-5436-01A | TCGA-CV-5436 | C20orf94|SLC24A3 | C20orf94 | SLC24A3 | 20 | 20 | 1 | 1 | 10 | 6 | 5 | 0.68 | 10438879 | 19261603 | tier1 | Out-of-frame | 2653 | NA | 0 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | UBP1|SLC24A3 | UBP1 | SLC24A3 | 3 | 20 | -1 | 1 | 42 | 29 | 29 | 0.58 | 33450728 | 19565615 | tier2 | In-frame | 19134 | NA | 0 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | SCRIB|NRBP2 | SCRIB | NRBP2 | 8 | 8 | -1 | -1 | 32 | 13 | 12 | 0.67 | 144897384 | 144922401 | tier1 | In-frame | 15437 | NA | 0 |
| HNSC | TCGA-CN-A6V6-01A | TCGA-CN-A6V6 | RNF126|PRSS57 | RNF126 | PRSS57 | 19 | 19 | -1 | -1 | 87 | 95 | 81 | 0.21 | 649679 | 687188 | tier1 | In-frame | 14754 | NA | 0 |
| LUSC | TCGA-37-4132-01A | TCGA-37-4132 | SBF2|PRMT3 | SBF2 | PRMT3 | 11 | 11 | -1 | 1 | 12 | 24 | 22 | 0.058 | 10315562 | 20473676 | tier1 | Out-of-frame | 15339 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | UEVLD|PRMT3 | UEVLD | PRMT3 | 11 | 11 | -1 | 1 | 52 | 52 | 49 | 0.82 | 18610160 | 20473676 | tier1 | In-frame | 19187 | non-validated | 0 |
| BRCA | TCGA-E2-A155-01A | TCGA-E2-A155 | ZNF322|PPIL6 | ZNF322 | PPIL6 | 6 | 6 | -1 | -1 | 4 | 42 | 38 | 1.5 | 26658786 | 109721373 | tier1 | 5UTR-CDS | 20460 | NA | 0 |
| SARC | TCGA-IF-A4AK-01A | TCGA-IF-A4AK | PRPF38A|CDNF | PRPF38A | CDNF | 1 | 10 | 1 | -1 | 3 | 5 | 5 | 0.51 | 52876872 | 14870271 | tier1 | CDS-5UTR | 13601 | NA | 0.34177 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | PYCR1|NOTUM | PYCR1 | NOTUM | 17 | 17 | -1 | -1 | 10 | 7 | 5 | 0.59 | 79893213 | 79916871 | tier1 | Out-of-frame | 13995 | NA | 0 |
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