Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7080-01A | TCGA-HC-7080 | AGPAT5|PRSS55 | AGPAT5 | PRSS55 | 8 | 8 | 1 | 1 | 6 | 8 | 7 | 0.003 | 6566408 | 10387017 | tier1 | Out-of-frame | 660 | NA | 0.3333 |
| GBM | TCGA-19-0957-02A | TCGA-19-0957 | NFIA|RNLS | NFIA | RNLS | 1 | 10 | 1 | -1 | 13 | 18 | 15 | 0.33 | 61554352 | 90122482 | tier1 | In-frame | 11469 | NA | 0.35315 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | ATAD1|RNLS | ATAD1 | RNLS | 10 | 10 | -1 | -1 | 28 | 37 | 32 | 0.16 | 89574195 | 90122482 | tier1 | Out-of-frame | 1574 | NA | 0.34708 |
| SKCM | TCGA-EE-A2MP-06A | TCGA-EE-A2MP | PCGF5|RNLS | PCGF5 | RNLS | 10 | 10 | 1 | -1 | 3 | 1 | 1 | 0.07 | 93024277 | 90332818 | tier4 | Out-of-frame | 12402 | NA | 0.34751 |
| ACC | TCGA-OR-A5KV-01A | TCGA-OR-A5KV | REPS2|APOO | REPS2 | APOO | X | X | 1 | -1 | 3 | 4 | 4 | 1.1 | 16965257 | 23899069 | tier1 | In-frame | 14543 | NA | 0 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | ACOT9|APOO | ACOT9 | APOO | X | X | -1 | -1 | 102 | 142 | 126 | 1.5 | 23748644 | 23851729 | tier1 | CDS-3UTR | 292 | non-validated | 0.327 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | ACOT9|APOO | ACOT9 | APOO | X | X | -1 | -1 | 10 | 10 | 10 | 1.5 | 23739998 | 23899069 | tier1 | In-frame | 293 | NA | 0.327 |
| BRCA | TCGA-EW-A1P7-01A | TCGA-EW-A1P7 | ZFX|APOO | ZFX | APOO | X | X | 1 | -1 | 46 | 62 | 55 | 0.085 | 24170947 | 23874499 | tier1 | 5UTR-CDS | 20292 | NA | 0 |
| LUSC | TCGA-43-A56U-01A | TCGA-43-A56U | ACOT9|APOO | ACOT9 | APOO | X | X | -1 | -1 | 17 | 13 | 9 | 1.5 | 23739998 | 23899069 | tier1 | In-frame | 290 | NA | 0.327 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | ACOT9|APOO | ACOT9 | APOO | X | X | -1 | -1 | 9 | 1 | 1 | 1.5 | 23739998 | 23899069 | tier3 | In-frame | 291 | NA | 0.327 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | SMC5|IMMP2L | SMC5 | IMMP2L | 9 | 7 | 1 | -1 | 377 | 411 | 384 | 0.007 | 72882891 | 110603621 | tier1 | In-frame | 16399 | validated | 0 |
| COAD | TCGA-AA-3492-01A | TCGA-AA-3492 | BZW2|IMMP2L | BZW2 | IMMP2L | 7 | 7 | 1 | -1 | 40 | 25 | 24 | 0.008 | 16722470 | 110303777 | tier1 | In-frame | 2293 | NA | 0.35308 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | DOCK4|IMMP2L | DOCK4 | IMMP2L | 7 | 7 | -1 | -1 | 34 | 18 | 18 | 0.12 | 111846157 | 110603621 | tier1 | Out-of-frame | 5035 | NA | 0.35724 |
| KIRP | TCGA-B9-4116-01A | TCGA-B9-4116 | ZNF277|IMMP2L | ZNF277 | IMMP2L | 7 | 7 | 1 | -1 | 349 | 220 | 210 | 0.034 | 111958328 | 110303777 | tier1 | Out-of-frame | 20434 | validated | 0 |
| LUAD | TCGA-78-7154-01A | TCGA-78-7154 | DOCK4|IMMP2L | DOCK4 | IMMP2L | 7 | 7 | -1 | -1 | 2 | 2 | 2 | 0.12 | 111846157 | 110303777 | tier2 | Out-of-frame | 5036 | NA | 0.35724 |
| LUAD | TCGA-38-4631-01A | TCGA-38-4631 | MKLN1|IMMP2L | MKLN1 | IMMP2L | 7 | 7 | 1 | -1 | 22 | 12 | 11 | 0.6 | 131130662 | 110303777 | tier1 | Out-of-frame | 10425 | NA | 0.34805 |
| LUAD | TCGA-78-7154-01A | TCGA-78-7154 | PILRB|IMMP2L | PILRB | IMMP2L | 7 | 7 | 1 | -1 | 5 | 5 | 2 | 2.4 | 99943591 | 111161505 | tier1 | 5UTR-5UTR | 12855 | NA | 0.3588 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | DOCK4|IMMP2L | DOCK4 | IMMP2L | 7 | 7 | -1 | -1 | 8 | 9 | 8 | 0.12 | 111846157 | 111127397 | tier4 | Out-of-frame | 5037 | NA | 0.35724 |
| SKCM | TCGA-FR-A726-01A | TCGA-FR-A726 | NEDD4L|IMMP2L | NEDD4L | IMMP2L | 18 | 7 | 1 | -1 | 15 | 7 | 7 | 0.46 | 56001124 | 110303777 | tier1 | In-frame | 11337 | NA | 0.37842 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ZNF681|IMMP2L | ZNF681 | IMMP2L | 19 | 7 | -1 | -1 | 3 | 14 | 13 | 0.1 | 23941549 | 110603621 | tier1 | Out-of-frame | 20622 | NA | 0 |
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