Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-CD-8535-01A | TCGA-CD-8535 | OSBPL5|MRGPRE | OSBPL5 | MRGPRE | 11 | 11 | -1 | -1 | 3 | 40 | 30 | 0.016 | 3140777 | 3250090 | tier1 | CDS-5UTR | 12083 | NA | 0.35273 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | SIPA1L3|COLEC10 | SIPA1L3 | COLEC10 | 19 | 8 | 1 | 1 | 3 | 1 | 1 | 0.36 | 38397998 | 120118039 | tier2 | 5UTR-CDS | 15947 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | MYH9|PLA2G6 | MYH9 | PLA2G6 | 22 | 22 | -1 | -1 | 8 | 9 | 9 | 0.072 | 36783852 | 38565478 | tier1 | 5UTR-5UTR | 10912 | NA | 0.37903 |
| HNSC | TCGA-CN-4740-01A | TCGA-CN-4740 | BAIAP2L2|PLA2G6 | BAIAP2L2 | PLA2G6 | 22 | 22 | -1 | -1 | 58 | 17 | 11 | 0.25 | 38506482 | 38516916 | tier4 | Out-of-frame | 1915 | NA | 0.35561 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | MYO1D|PLA2G6 | MYO1D | PLA2G6 | 17 | 22 | -1 | -1 | 10 | 9 | 9 | 0.6 | 31203796 | 38565478 | tier1 | CDS-5UTR | 10974 | non-validated | 0.36714 |
| PAAD | TCGA-F2-A7TX-01A | TCGA-F2-A7TX | BAIAP2L2|PLA2G6 | BAIAP2L2 | PLA2G6 | 22 | 22 | -1 | -1 | 248 | 176 | 107 | 0.25 | 38506482 | 38509661 | tier1 | In-frame | 1916 | NA | 0.35561 |
| UCS | TCGA-NF-A4WX-01A | TCGA-NF-A4WX | TMEM131|PLA2G6 | TMEM131 | PLA2G6 | 2 | 22 | -1 | -1 | 25 | 14 | 14 | 2.7 | 98408849 | 38531091 | tier1 | Out-of-frame | 17957 | NA | 0 |
| SKCM | TCGA-D9-A1JX-06A | TCGA-D9-A1JX | ZNF280B|BPIFC | ZNF280B | BPIFC | 22 | 22 | -1 | -1 | 22 | 13 | 12 | 0.43 | 22862128 | 32843327 | tier1 | 5UTR-CDS | 20435 | NA | 0 |
| KIRP | TCGA-BQ-7056-01A | TCGA-BQ-7056 | SAMM50|TXNRD2 | SAMM50 | TXNRD2 | 22 | 22 | 1 | -1 | 5 | 11 | 11 | 0.66 | 44351478 | 19918621 | tier1 | Out-of-frame | 15304 | NA | 0 |
| LUSC | TCGA-NC-A5HK-01A | TCGA-NC-A5HK | GNB1L|TXNRD2 | GNB1L | TXNRD2 | 22 | 22 | -1 | -1 | 16 | 5 | 5 | 0.75 | 19841966 | 19907122 | tier4 | 5UTR-CDS | 7217 | NA | 0.35292 |
| LGG | TCGA-TQ-A7RV-01A | TCGA-TQ-A7RV | ABI1|PTP4A3 | ABI1 | PTP4A3 | 10 | 8 | -1 | 1 | 11 | 8 | 5 | 0.86 | 27112067 | 142431488 | tier1 | CDS-5UTR | 100 | non-validated | 0.37364 |
| COAD | TCGA-A6-6654-01A | TCGA-A6-6654 | RUNX1|PROS1 | RUNX1 | PROS1 | 21 | 3 | -1 | -1 | 16 | 17 | 15 | 0.92 | 36206707 | 93646251 | tier1 | In-frame | 15181 | NA | 0 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | C3orf72|PROS1 | C3orf72 | PROS1 | 3 | 3 | 1 | -1 | 9 | 4 | 4 | 0.011 | 138666306 | 93646251 | tier1 | In-frame | 2719 | NA | 0 |
| BRCA | TCGA-AC-A62V-01A | TCGA-AC-A62V | HAP1|GAST | HAP1 | GAST | 17 | 17 | -1 | 1 | 3 | 5 | 3 | 0.002 | 39887745 | 39871684 | tier2 | CDS-5UTR | 7585 | NA | 0.36243 |
| UCEC | TCGA-EY-A2ON-01A | TCGA-EY-A2ON | AFF1|GAST | AFF1 | GAST | 4 | 17 | 1 | 1 | 6 | 3 | 3 | 0.044 | 87869723 | 39871684 | tier1 | CDS-5UTR | 577 | NA | 0.3559 |
| BRCA | TCGA-EW-A6SD-01A | TCGA-EW-A6SD | GCNT2|PDE4B | GCNT2 | PDE4B | 6 | 1 | 1 | 1 | 2 | 7 | 6 | 2.6 | 10530069 | 66378928 | tier3 | CDS-5UTR | 7015 | NA | 0.34988 |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | INADL|PDE4B | INADL | PDE4B | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 1.4 | 62393501 | 66713143 | tier1 | Out-of-frame | 8227 | NA | 0.37202 |
| LUAD | TCGA-86-8279-01A | TCGA-86-8279 | ASB8|NELL2 | ASB8 | NELL2 | 12 | 12 | -1 | -1 | 3 | 3 | 2 | 0.028 | 48544984 | 44902767 | tier1 | In-frame | 1496 | NA | 0.36783 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | SMAGP|NELL2 | SMAGP | NELL2 | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.14 | 51664040 | 45269683 | tier3 | 5UTR-CDS | 16356 | NA | 0 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | HMGA2|NELL2 | HMGA2 | NELL2 | 12 | 12 | 1 | -1 | 23 | 13 | 12 | 0.025 | 66232349 | 45097637 | tier1 | Out-of-frame | 7861 | NA | 0.37384 |
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