Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 511 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A0CG-01A | TCGA-A7-A0CG | LRP6|GPR19 | LRP6 | GPR19 | 12 | 12 | -1 | -1 | 5 | 4 | 2 | 0.62 | 12397196 | 12815404 | tier1 | CDS-5UTR | 9544 | NA | 0.37053 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | MYH14|GPR19 | MYH14 | GPR19 | 19 | 12 | 1 | -1 | 2 | 22 | 19 | 5.2 | 50714027 | 12848445 | tier2 | CDS-5UTR | 10891 | NA | 0.36415 |
| PRAD | TCGA-HC-7749-01A | TCGA-HC-7749 | ATMIN|GPR19 | ATMIN | GPR19 | 16 | 12 | 1 | -1 | 12 | 12 | 9 | 1.1 | 81069811 | 12848445 | tier1 | CDS-5UTR | 1653 | NA | 0.35815 |
| BLCA | TCGA-DK-A3IN-01A | TCGA-DK-A3IN | CABIN1|GRIN2A | CABIN1 | GRIN2A | 22 | 16 | 1 | -1 | 5 | 5 | 5 | 0.32 | 24515665 | 9984957 | tier1 | Out-of-frame | 2842 | NA | 0.38167 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | CLEC16A|GRIN2A | CLEC16A | GRIN2A | 16 | 16 | 1 | -1 | 2 | 4 | 4 | 0.29 | 11154879 | 10032408 | tier2 | Out-of-frame | 3777 | NA | 0.37769 |
| BRCA | TCGA-BH-A5J0-01A | TCGA-BH-A5J0 | MOBKL1B|GRIN2A | MOBKL1B | GRIN2A | 2 | 16 | -1 | -1 | 2 | 1 | 1 | 0.1 | 74405788 | 9928087 | tier3 | Out-of-frame | 10563 | NA | 0.38209 |
| LGG | TCGA-CS-5397-01A | TCGA-CS-5397 | SHB|GRIN2A | SHB | GRIN2A | 9 | 16 | -1 | -1 | 2 | 4 | 4 | 1.4 | 37955880 | 9943818 | tier2 | Out-of-frame | 15870 | NA | 0 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | DSE|GRIN2A | DSE | GRIN2A | 6 | 16 | 1 | -1 | 3 | 1 | 1 | 0.63 | 116692284 | 10032408 | tier3 | 5UTR-CDS | 5123 | NA | 0.37514 |
| SKCM | TCGA-D3-A2JG-06A | TCGA-D3-A2JG | CADPS|FAM19A1 | CADPS | FAM19A1 | 3 | 3 | -1 | 1 | 25 | 14 | 11 | 4.8 | 62451042 | 68466430 | tier1 | Out-of-frame | 2890 | NA | 0.35929 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | SEPT14|UPP1 | SEPT14 | UPP1 | 7 | 7 | -1 | 1 | 6 | 4 | 4 | 3.2 | 55929636 | 48141421 | tier1 | In-frame | 15596 | NA | 0 |
| LUSC | TCGA-O2-A52N-01A | TCGA-O2-A52N | URGCP|UPP1 | URGCP | UPP1 | 7 | 7 | -1 | 1 | 8 | 7 | 4 | 1.4 | 43965731 | 48134360 | tier1 | 5UTR-5UTR | 19293 | NA | 0 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | SHANK2|OPCML | SHANK2 | OPCML | 11 | 11 | -1 | -1 | 3 | 3 | 3 | 0.63 | 70505933 | 132399080 | tier1 | Out-of-frame | 15858 | NA | 0 |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | CUL5|OPCML | CUL5 | OPCML | 11 | 11 | 1 | -1 | 6 | 3 | 3 | 1.6 | 107880098 | 132307253 | tier1 | Out-of-frame | 4439 | NA | 0.37669 |
| SARC | TCGA-PC-A5DP-01A | TCGA-PC-A5DP | IGSF9B|OPCML | IGSF9B | OPCML | 11 | 11 | -1 | -1 | 6 | 3 | 2 | 0.51 | 133815956 | 132812905 | tier1 | CDS-5UTR | 8136 | NA | 0.36118 |
| SKCM | TCGA-W3-AA1V-06B | TCGA-W3-AA1V | MARCH3|OPCML | MARCH3 | OPCML | 5 | 11 | -1 | -1 | 5 | 25 | 22 | 0.084 | 126366042 | 132812905 | tier1 | 5UTR-5UTR | 9982 | NA | 0 |
| READ | TCGA-EF-5830-01A | TCGA-EF-5830 | RASSF3|TBK1 | RASSF3 | TBK1 | 12 | 12 | 1 | 1 | 18 | 20 | 16 | 1.4 | 65004523 | 64889263 | tier1 | In-frame | 14384 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | FRS2|TBK1 | FRS2 | TBK1 | 12 | 12 | 1 | 1 | 148 | 83 | 74 | 0.065 | 69864310 | 64860681 | tier1 | 5UTR-CDS | 6790 | NA | 0.38888 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | SYT1|TBK1 | SYT1 | TBK1 | 12 | 12 | 1 | 1 | 8 | 10 | 10 | 0.013 | 79441142 | 64889263 | tier1 | 5UTR-CDS | 17274 | NA | 0 |
| BRCA | TCGA-EW-A1IX-01A | TCGA-EW-A1IX | AHI1|CHEK2 | AHI1 | CHEK2 | 6 | 22 | -1 | -1 | 9 | 5 | 4 | 1.9 | 135644300 | 29121355 | tier1 | In-frame | 687 | NA | 0.38423 |
| BRCA | TCGA-AQ-A04J-01A | TCGA-AQ-A04J | RP11-35N6.1|SLC35F3 | RP11-35N6.1 | SLC35F3 | 9 | 1 | 1 | 1 | 2 | 2 | 2 | 0.89 | 103791384 | 234444847 | tier2 | 5UTR-CDS | 14925 | validated | 0 |
|
Showing page 511 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.