Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | CCDC157|EWSR1 | CCDC157 | EWSR1 | 22 | 22 | 1 | 1 | 38 | 35 | 33 | 1 | 30753121 | 29688126 | tier1 | 5UTR-CDS | 3126 | NA | 0.38164 |
| ACC | TCGA-OR-A5JZ-01A | TCGA-OR-A5JZ | CRIP2|MTA1 | CRIP2 | MTA1 | 14 | 14 | 1 | 1 | 11 | 3 | 2 | 2.3 | 105941242 | 105935804 | tier1 | In-frame | 4225 | NA | 0.38333 |
| LIHC | TCGA-4R-AA8I-01A | TCGA-4R-AA8I | SFXN5|SLC8A1 | SFXN5 | SLC8A1 | 2 | 2 | -1 | -1 | 7 | 3 | 2 | 0.26 | 73247368 | 40404995 | tier1 | Out-of-frame | 15772 | NA | 0 |
| LIHC | TCGA-DD-AAW0-01A | TCGA-DD-AAW0 | SOCS5|SLC8A1 | SOCS5 | SLC8A1 | 2 | 2 | 1 | -1 | 2 | 7 | 6 | 3.6 | 46926588 | 40680489 | tier2 | NA | 16574 | NA | 0 |
| PRAD | TCGA-ZG-A9MC-01A | TCGA-ZG-A9MC | SP3|SLC8A1 | SP3 | SLC8A1 | 2 | 2 | -1 | -1 | 15 | 16 | 15 | 0.033 | 174819601 | 40342769 | tier1 | In-frame | 16642 | NA | 0 |
| HNSC | TCGA-F7-A623-01A | TCGA-F7-A623 | KIF13B|SLC25A21 | KIF13B | SLC25A21 | 8 | 14 | -1 | -1 | 9 | 3 | 3 | 0.87 | 28950262 | 37344209 | tier1 | Out-of-frame | 8944 | NA | 0.36859 |
| HNSC | TCGA-CV-6940-01A | TCGA-CV-6940 | NAA25|SLC25A21 | NAA25 | SLC25A21 | 12 | 14 | -1 | -1 | 117 | 69 | 66 | 0.6 | 112525487 | 37154130 | tier1 | In-frame | 11039 | NA | 0.33513 |
| LUAD | TCGA-44-7669-01A | TCGA-44-7669 | FOXN3|SLC25A21 | FOXN3 | SLC25A21 | 14 | 14 | -1 | -1 | 31 | 24 | 20 | 0.22 | 89656728 | 37344209 | tier1 | In-frame | 6676 | NA | 0.34948 |
| LUSC | TCGA-39-5034-01A | TCGA-39-5034 | NKX2-1|SLC25A21 | NKX2-1 | SLC25A21 | 14 | 14 | -1 | -1 | 4 | 8 | 7 | 0.89 | 36988190 | 37153085 | tier1 | Out-of-frame | 11589 | NA | 0.36908 |
| PRAD | TCGA-HC-A8D0-01A | TCGA-HC-A8D0 | RALGAPA1|SLC25A21 | RALGAPA1 | SLC25A21 | 14 | 14 | -1 | -1 | 2 | 2 | 2 | 0.79 | 36277936 | 37344209 | tier3 | In-frame | 14216 | NA | 0 |
| LGG | TCGA-CS-5397-01A | TCGA-CS-5397 | RUSC2|ABAT | RUSC2 | ABAT | 9 | 16 | 1 | 1 | 18 | 61 | 59 | 0.092 | 35490169 | 8857926 | tier1 | 5UTR-CDS | 15197 | NA | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | PMM2|ABAT | PMM2 | ABAT | 16 | 16 | 1 | 1 | 14 | 7 | 6 | 0.46 | 8905570 | 8829556 | tier1 | CDS-5UTR | 13109 | NA | 0.33588 |
| STAD | TCGA-VQ-A922-01A | TCGA-VQ-A922 | C16orf72|ABAT | C16orf72 | ABAT | 16 | 16 | 1 | 1 | 2 | 16 | 15 | 0.008 | 9197116 | 8851614 | tier4 | In-frame | 2492 | NA | 0 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | NEBL|CAMK1D | NEBL | CAMK1D | 10 | 10 | -1 | 1 | 5 | 3 | 3 | 2.7 | 21461312 | 12595224 | tier1 | In-frame | 11315 | NA | 0.37421 |
| LIHC | TCGA-DD-A1EJ-01A | TCGA-DD-A1EJ | MCF2L|GAS6 | MCF2L | GAS6 | 13 | 13 | 1 | -1 | 5 | 8 | 6 | 0.051 | 113669160 | 114542823 | tier1 | In-frame | 10087 | non-validated | 0.38307 |
| BRCA | TCGA-GM-A2DF-01A | TCGA-GM-A2DF | DNAJC3|GPC6 | DNAJC3 | GPC6 | 13 | 13 | 1 | 1 | 4 | 1 | 1 | 0.53 | 96329591 | 94679983 | tier2 | Out-of-frame | 4948 | validated | 0.37293 |
| BRCA | TCGA-E2-A14R-01A | TCGA-E2-A14R | PLEKHA5|GPC6 | PLEKHA5 | GPC6 | 12 | 13 | 1 | 1 | 2 | 2 | 2 | 0.61 | 19285384 | 94938603 | tier3 | Out-of-frame | 13001 | NA | 0.36109 |
| LUSC | TCGA-60-2709-01A | TCGA-60-2709 | FARP1|GPC6 | FARP1 | GPC6 | 13 | 13 | 1 | 1 | 2 | 4 | 4 | 0.13 | 99038068 | 94482407 | tier4 | Out-of-frame | 6241 | NA | 0.35528 |
| SKCM | TCGA-FS-A1ZQ-06A | TCGA-FS-A1ZQ | GPR180|GPC6 | GPR180 | GPC6 | 13 | 13 | 1 | 1 | 14 | 8 | 8 | 0.043 | 95257803 | 95034668 | tier1 | Out-of-frame | 7373 | NA | 0.34536 |
| BLCA | TCGA-DK-A6AV-01A | TCGA-DK-A6AV | CREBL2|GPR19 | CREBL2 | GPR19 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 0.81 | 12765121 | 12848445 | tier1 | CDS-5UTR | 4215 | NA | 0.34983 |
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