Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-G2-AA3B-01A | TCGA-G2-AA3B | PPIP5K2|CAPN12 | PPIP5K2 | CAPN12 | 5 | 19 | 1 | -1 | 3 | 4 | 4 | 0.66 | 102456192 | 39221863 | tier1 | 5UTR-CDS | 13300 | NA | 0.33469 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | ZNF607|CAPN12 | ZNF607 | CAPN12 | 19 | 19 | -1 | -1 | 24 | 13 | 2 | 0.14 | 38198815 | 39233168 | tier1 | In-frame | 20585 | non-validated | 0 |
| PRAD | TCGA-HC-A4ZV-01A | TCGA-HC-A4ZV | NFIX|CAPN12 | NFIX | CAPN12 | 19 | 19 | 1 | -1 | 193 | 120 | 49 | 0.004 | 13192669 | 39233168 | tier1 | Out-of-frame | 11490 | NA | 0.3655 |
| LGG | TCGA-CS-6666-01A | TCGA-CS-6666 | SFI1|LIMK2 | SFI1 | LIMK2 | 22 | 22 | 1 | 1 | 15 | 4 | 4 | 0.54 | 31904362 | 31654277 | tier1 | In-frame | 15735 | NA | 0 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | STRN3|RNASE10 | STRN3 | RNASE10 | 14 | 14 | -1 | 1 | 3 | 3 | 3 | 0.047 | 31495110 | 20978626 | tier1 | Out-of-frame | 17120 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | UBE2G1|SPNS3 | UBE2G1 | SPNS3 | 17 | 17 | -1 | 1 | 50 | 57 | 48 | 3.4 | 4269566 | 4381867 | tier1 | Out-of-frame | 19071 | NA | 0 |
| BRCA | TCGA-AQ-A04J-01A | TCGA-AQ-A04J | PIGZ|EPHB3 | PIGZ | EPHB3 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 0.12 | 196678692 | 184289106 | tier3 | In-frame | 12826 | non-validated | 0.37775 |
| STAD | TCGA-IN-A6RN-01A | TCGA-IN-A6RN | VPS8|EPHB3 | VPS8 | EPHB3 | 3 | 3 | 1 | 1 | 2 | 6 | 4 | 0.22 | 184742177 | 184293618 | tier3 | Out-of-frame | 19676 | NA | 0 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | C20orf94|PLCB1 | C20orf94 | PLCB1 | 20 | 20 | 1 | 1 | 3 | 1 | 1 | 4.4 | 10416101 | 8737693 | tier3 | 5UTR-CDS | 2652 | NA | 0 |
| SARC | TCGA-QQ-A5VB-01A | TCGA-QQ-A5VB | CALR3|PLCB1 | CALR3 | PLCB1 | 19 | 20 | -1 | 1 | 17 | 8 | 6 | 2.3 | 16738683 | 8608941 | tier1 | 5UTR-CDS | 2914 | NA | 0.37787 |
| LUSC | TCGA-77-A5G6-01A | TCGA-77-A5G6 | ATG5|NTM | ATG5 | NTM | 6 | 11 | -1 | 1 | 26 | 43 | 37 | 1.3 | 106696025 | 131781458 | tier1 | Out-of-frame | 1634 | NA | 0.34203 |
| BRCA | TCGA-AR-A0TV-01A | TCGA-AR-A0TV | LRP12|KCNB2 | LRP12 | KCNB2 | 8 | 8 | -1 | 1 | 16 | 11 | 10 | 0.15 | 105601047 | 73479877 | tier1 | CDS-5UTR | 9514 | NA | 0.36559 |
| BRCA | TCGA-S3-AA11-01A | TCGA-S3-AA11 | SEC31B|GRID1 | SEC31B | GRID1 | 10 | 10 | -1 | -1 | 8 | 8 | 8 | 3.4 | 102265118 | 87407154 | tier1 | Out-of-frame | 15526 | NA | 0 |
| HNSC | TCGA-BA-6868-01B | TCGA-BA-6868 | SGMS1|GRID1 | SGMS1 | GRID1 | 10 | 10 | -1 | -1 | 15 | 12 | 11 | 2.7 | 52226650 | 87675996 | tier1 | 5UTR-CDS | 15782 | NA | 0 |
| LAML | TCGA-AB-2915-03A | TCGA-AB-2915 | DPM1|GRID1 | DPM1 | GRID1 | 20 | 10 | -1 | -1 | 13 | 9 | 9 | 0.24 | 49571723 | 87675996 | tier1 | In-frame | 5077 | NA | 0.35728 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | TRAPPC10|GRID1 | TRAPPC10 | GRID1 | 21 | 10 | 1 | -1 | 2 | 8 | 7 | 1.5 | 45432441 | 87628937 | tier2 | Out-of-frame | 18568 | NA | 0 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | CYTH3|GRID1 | CYTH3 | GRID1 | 7 | 10 | -1 | -1 | 64 | 38 | 32 | 0.006 | 6312105 | 87966405 | tier1 | In-frame | 4516 | NA | 0.36447 |
| PAAD | TCGA-2J-AAB1-01A | TCGA-2J-AAB1 | THAP3|LCK | THAP3 | LCK | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 100 | 6685352 | 32739926 | tier2 | CDS-5UTR | 17761 | NA | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | CAMTA2|LCK | CAMTA2 | LCK | 17 | 1 | -1 | 1 | 8 | 17 | 15 | 0.37 | 4890888 | 32745272 | tier1 | 5UTR-CDS | 2946 | NA | 0.38402 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | TTC28|EWSR1 | TTC28 | EWSR1 | 22 | 22 | -1 | 1 | 21 | 15 | 14 | 1.1 | 29025540 | 29694723 | tier1 | Out-of-frame | 18842 | NA | 0 |
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