Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | DZIP1L|TXNDC6 | DZIP1L | TXNDC6 | 3 | 3 | -1 | -1 | 3 | 18 | 17 | 3.2 | 137805803 | 138022485 | tier1 | Out-of-frame | 5241 | NA | 0.3439 |
| HNSC | TCGA-CQ-5332-01A | TCGA-CQ-5332 | PANX1|HEPHL1 | PANX1 | HEPHL1 | 11 | 11 | 1 | 1 | 36 | 11 | 9 | 0.53 | 93862659 | 93844703 | tier1 | In-frame | 12244 | NA | 0.33535 |
| HNSC | TCGA-CV-7247-01A | TCGA-CV-7247 | PANX1|HEPHL1 | PANX1 | HEPHL1 | 11 | 11 | 1 | 1 | 11 | 4 | 4 | 0.53 | 93862659 | 93826667 | tier1 | Out-of-frame | 12245 | NA | 0.33535 |
| LIHC | TCGA-CC-5258-01A | TCGA-CC-5258 | LRRFIP2|SETD2 | LRRFIP2 | SETD2 | 3 | 3 | -1 | -1 | 7 | 8 | 8 | 0.33 | 37216030 | 47088111 | tier1 | 5UTR-CDS | 9614 | NA | 0.36478 |
| MESO | TCGA-UT-A88E-01B | TCGA-UT-A88E | POLR1A|SETD2 | POLR1A | SETD2 | 2 | 3 | -1 | -1 | 9 | 3 | 3 | 0.57 | 86292397 | 47079267 | tier1 | Out-of-frame | 13166 | NA | 0.3691 |
| SARC | TCGA-DX-A6YS-01A | TCGA-DX-A6YS | APPBP2|SETD2 | APPBP2 | SETD2 | 17 | 3 | -1 | -1 | 10 | 15 | 14 | 0.56 | 58571827 | 47061330 | tier1 | Out-of-frame | 1156 | NA | 0.36818 |
| BRCA | TCGA-A2-A0T1-01A | TCGA-A2-A0T1 | SAMD12|C4orf7 | SAMD12 | C4orf7 | 8 | 4 | -1 | 1 | 39 | 34 | 33 | 0.61 | 119592954 | 71096912 | tier1 | In-frame | 15277 | NA | 0 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | STAG1|P2RY13 | STAG1 | P2RY13 | 3 | 3 | -1 | -1 | 5 | 2 | 2 | 0.6 | 136471037 | 151046795 | tier1 | 5UTR-CDS | 16984 | NA | 0 |
| STAD | TCGA-VQ-A8DZ-01A | TCGA-VQ-A8DZ | ABR|BAI1 | ABR | BAI1 | 17 | 8 | -1 | 1 | 3 | 26 | 24 | 0.36 | 953290 | 143599499 | tier1 | In-frame | 121 | NA | 0.37166 |
| KIRC | TCGA-CJ-4886-01A | TCGA-CJ-4886 | MCC|SLC9A9 | MCC | SLC9A9 | 5 | 3 | -1 | -1 | 3 | 1 | 1 | 3.7 | 112630026 | 143551063 | tier2 | Out-of-frame | 10080 | NA | 0.3688 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | MRPS22|SLC9A9 | MRPS22 | SLC9A9 | 3 | 3 | 1 | -1 | 6 | 9 | 9 | 0.69 | 139071634 | 143412149 | tier1 | In-frame | 10676 | NA | 0.34443 |
| BRCA | TCGA-AC-A6IX-01A | TCGA-AC-A6IX | NDUFB9|TDRKH | NDUFB9 | TDRKH | 8 | 1 | 1 | -1 | 267 | 180 | 163 | 1.8 | 125551528 | 151755525 | tier1 | CDS-5UTR | 11303 | NA | 0.36043 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | SRGAP1|BACE2 | SRGAP1 | BACE2 | 12 | 21 | 1 | 1 | 3 | 1 | 1 | 0.95 | 64238663 | 42598193 | tier3 | Out-of-frame | 16840 | NA | 0 |
| BLCA | TCGA-FD-A43P-01A | TCGA-FD-A43P | FAM189A1|GABRG3 | FAM189A1 | GABRG3 | 15 | 15 | -1 | 1 | 11 | 10 | 9 | 0.096 | 29544572 | 27571956 | tier1 | In-frame | 6117 | NA | 0.33713 |
| BRCA | TCGA-BH-A208-01A | TCGA-BH-A208 | OSBPL3|GABRG3 | OSBPL3 | GABRG3 | 7 | 15 | -1 | 1 | 4 | 2 | 1 | 1.7 | 25019505 | 27725796 | tier3 | 5UTR-CDS | 12080 | NA | 0.36831 |
| LIHC | TCGA-ZP-A9CZ-01A | TCGA-ZP-A9CZ | CLSTN3|C1S | CLSTN3 | C1S | 12 | 12 | 1 | 1 | 89 | 67 | 65 | 0.13 | 7288987 | 7169056 | tier1 | CDS-5UTR | 3855 | NA | 0.3661 |
| LGG | TCGA-E1-A7YN-01A | TCGA-E1-A7YN | ATAD1|LIPF | ATAD1 | LIPF | 10 | 10 | -1 | 1 | 21 | 38 | 34 | 0.84 | 89550067 | 90427044 | tier1 | CDS-5UTR | 1572 | NA | 0.35195 |
| SARC | TCGA-X6-A8C2-01A | TCGA-X6-A8C2 | TANK|CACNB4 | TANK | CACNB4 | 2 | 2 | 1 | -1 | 2 | 6 | 4 | 0.051 | 162016997 | 152739884 | tier2 | 5UTR-CDS | 17386 | NA | 0 |
| BRCA | TCGA-A2-A3XX-01A | TCGA-A2-A3XX | C19orf2|IL29 | C19orf2 | IL29 | 19 | 19 | 1 | 1 | 20 | 11 | 11 | 0.93 | 30462134 | 39787445 | tier4 | 5UTR-CDS | 2554 | non-validated | 0 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | TSHZ3|IL29 | TSHZ3 | IL29 | 19 | 19 | -1 | 1 | 5 | 13 | 11 | 1.9 | 31840086 | 39787445 | tier1 | Out-of-frame | 18777 | NA | 0 |
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