Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | MBD3|GAK | MBD3 | GAK | 19 | 4 | -1 | -1 | 29 | 104 | 96 | 0.12 | 1592617 | 871597 | tier1 | In-frame | 10046 | NA | 0.38238 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | ACOT7|FUCA1 | ACOT7 | FUCA1 | 1 | 1 | -1 | -1 | 26 | 19 | 15 | 0.61 | 6341162 | 24181050 | tier1 | In-frame | 284 | NA | 0.33832 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | NFIX|DAND5 | NFIX | DAND5 | 19 | 19 | 1 | 1 | 47 | 64 | 56 | 0.35 | 13201204 | 13084203 | tier1 | 3UTR-CDS | 11493 | NA | 0.36504 |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | NFIX|DAND5 | NFIX | DAND5 | 19 | 19 | 1 | 1 | 10 | 4 | 3 | 0.35 | 13136366 | 13084203 | tier1 | Out-of-frame | 11494 | validated | 0.36504 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | NFIX|DAND5 | NFIX | DAND5 | 19 | 19 | 1 | 1 | 6 | 4 | 3 | 0.35 | 13201204 | 13084203 | tier1 | 3UTR-CDS | 11492 | non-validated | 0.36504 |
| OV | TCGA-24-1558-01A | TCGA-24-1558 | ZNF20|DAND5 | ZNF20 | DAND5 | 19 | 19 | -1 | 1 | 58 | 31 | 19 | 0.66 | 12250995 | 13084203 | tier1 | In-frame | 20394 | non-validated | 0 |
| STAD | TCGA-IN-A6RI-01A | TCGA-IN-A6RI | DNM2|DAND5 | DNM2 | DAND5 | 19 | 19 | 1 | 1 | 44 | 150 | 132 | 0.028 | 10870487 | 13084203 | tier1 | Out-of-frame | 4972 | NA | 0.37766 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | COG6|GPC5 | COG6 | GPC5 | 13 | 13 | 1 | 1 | 2 | 3 | 3 | 0.15 | 40301685 | 93518535 | tier3 | Out-of-frame | 3981 | NA | 0.34909 |
| LIHC | TCGA-ZP-A9CZ-01A | TCGA-ZP-A9CZ | GTF2F2|GPC5 | GTF2F2 | GPC5 | 13 | 13 | 1 | 1 | 26 | 20 | 20 | 0.51 | 45694856 | 92797083 | tier1 | In-frame | 7526 | NA | 0.36728 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | ERC1|GPC5 | ERC1 | GPC5 | 12 | 13 | 1 | 1 | 2 | 2 | 2 | 3.4 | 1250953 | 93518535 | tier2 | Out-of-frame | 5745 | NA | 0.3642 |
| SARC | TCGA-DX-AB2T-01A | TCGA-DX-AB2T | UGGT2|GPC5 | UGGT2 | GPC5 | 13 | 13 | -1 | 1 | 4 | 1 | 1 | 0.14 | 96529533 | 93518535 | tier2 | Out-of-frame | 19196 | NA | 0 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | RNMTL1|ALOX15B | RNMTL1 | ALOX15B | 17 | 17 | 1 | 1 | 10 | 3 | 3 | 0.17 | 691372 | 7942704 | tier1 | Out-of-frame | 14863 | NA | 0 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | LRRC68|ALOX15B | LRRC68 | ALOX15B | 19 | 17 | 1 | 1 | 14 | 9 | 8 | 0.007 | 45596785 | 7945687 | tier1 | Out-of-frame | 9581 | NA | 0.35591 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | CPSF6|GRM8 | CPSF6 | GRM8 | 12 | 7 | 1 | -1 | 18 | 24 | 24 | 0.023 | 69656342 | 126746766 | tier1 | 3UTR-CDS | 4155 | NA | 0.37269 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | GATAD2B|GRM8 | GATAD2B | GRM8 | 1 | 7 | -1 | -1 | 225 | 243 | 225 | 0.025 | 153895209 | 126086426 | tier1 | 5UTR-CDS | 6982 | non-validated | 0.37672 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | MKLN1|GRM8 | MKLN1 | GRM8 | 7 | 7 | 1 | -1 | 7 | 8 | 7 | 0.13 | 131096142 | 126883569 | tier1 | CDS-5UTR | 10424 | NA | 0.36367 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | CREB3L4|FCER1A | CREB3L4 | FCER1A | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.072 | 153941931 | 159272644 | tier2 | Out-of-frame | 4195 | validated | 0.36529 |
| SKCM | TCGA-GN-A268-06A | TCGA-GN-A268 | SBF2|MRGPRX3 | SBF2 | MRGPRX3 | 11 | 11 | -1 | 1 | 4 | 4 | 3 | 0.003 | 10315562 | 18154161 | tier1 | CDS-5UTR | 15334 | NA | 0 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | C2CD3|ABCA13 | C2CD3 | ABCA13 | 11 | 7 | -1 | 1 | 7 | 9 | 8 | 1.3 | 73843889 | 48520633 | tier1 | Out-of-frame | 2677 | NA | 0.3499 |
| LUAD | TCGA-44-A479-01A | TCGA-44-A479 | KIAA1324L|ABCA13 | KIAA1324L | ABCA13 | 7 | 7 | -1 | 1 | 2 | 3 | 3 | 1.2 | 86547758 | 48308577 | tier3 | Out-of-frame | 8856 | NA | 0.34001 |
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