Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | ZNF821|CHD9 | ZNF821 | CHD9 | 16 | 16 | -1 | 1 | 4 | 2 | 2 | 0.23 | 71913810 | 53269097 | tier1 | Out-of-frame | 20677 | NA | 0 |
| BRCA | TCGA-A1-A0SP-01A | TCGA-A1-A0SP | NUBP1|UMODL1 | NUBP1 | UMODL1 | 16 | 21 | 1 | 1 | 9 | 5 | 5 | 0.24 | 10851884 | 43508404 | tier2 | In-frame | 11848 | NA | 0.35192 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | C21orf2|UMODL1 | C21orf2 | UMODL1 | 21 | 21 | -1 | 1 | 55 | 39 | 36 | 0.12 | 45759001 | 43562206 | tier1 | CDS-3UTR | 2654 | NA | 0 |
| BLCA | TCGA-GV-A3JW-01A | TCGA-GV-A3JW | ZNF430|CD19 | ZNF430 | CD19 | 19 | 16 | 1 | 1 | 2 | 3 | 3 | 0.95 | 21205687 | 28944232 | tier4 | Out-of-frame | 20499 | NA | 0 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | RPTOR|CD163 | RPTOR | CD163 | 17 | 12 | 1 | -1 | 12 | 21 | 2 | 1 | 78599593 | 7655160 | tier1 | In-frame | 15104 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | POGZ|GBA | POGZ | GBA | 1 | 1 | -1 | -1 | 9 | 9 | 9 | 0.57 | 151395873 | 155210971 | tier2 | CDS-5UTR | 13136 | NA | 0.36608 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | TFIP11|IL17RA | TFIP11 | IL17RA | 22 | 22 | -1 | 1 | 4 | 4 | 4 | 1.1 | 26906030 | 17577952 | tier1 | Out-of-frame | 17725 | NA | 0 |
| LIHC | TCGA-DD-AA3A-01A | TCGA-DD-AA3A | RNF6|NAALADL2 | RNF6 | NAALADL2 | 13 | 3 | -1 | 1 | 2 | 3 | 3 | 0.2 | 26792648 | 175455094 | tier3 | Out-of-frame | 14851 | NA | 0 |
| LUSC | TCGA-21-1077-01A | TCGA-21-1077 | FNDC3B|NAALADL2 | FNDC3B | NAALADL2 | 3 | 3 | 1 | 1 | 24 | 19 | 18 | 0.4 | 171757561 | 174814580 | tier1 | 5UTR-CDS | 6609 | NA | 0.34381 |
| SARC | TCGA-IW-A3M5-01A | TCGA-IW-A3M5 | ANKRD11|NAALADL2 | ANKRD11 | NAALADL2 | 16 | 3 | -1 | 1 | 3 | 1 | 1 | 0.47 | 89357033 | 174951721 | tier2 | Out-of-frame | 954 | validated | 0.37358 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | LRAT|NAALADL2 | LRAT | NAALADL2 | 4 | 3 | 1 | 1 | 12 | 4 | 3 | 0.071 | 155557548 | 174814580 | tier1 | NA | 9470 | NA | 0.34818 |
| ACC | TCGA-OR-A5J8-01A | TCGA-OR-A5J8 | CAPRIN1|CD151 | CAPRIN1 | CD151 | 11 | 11 | 1 | 1 | 50 | 14 | 12 | 0.84 | 34112225 | 838133 | tier1 | In-frame | 2972 | NA | 0.36218 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | UNK|KIAA0195 | UNK | KIAA0195 | 17 | 17 | 1 | 1 | 3 | 46 | 3 | 0.065 | 73781065 | 73467881 | tier1 | CDS-5UTR | 19262 | NA | 0 |
| LUAD | TCGA-44-2668-01A | TCGA-44-2668 | AC040980.1|KIAA0195 | AC040980.1 | KIAA0195 | 17 | 17 | 1 | 1 | 6 | 2 | 2 | 0.19 | 73975592 | 73467881 | tier1 | 5UTR-5UTR | 190 | non-validated | 0.32687 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | UNK|KIAA0195 | UNK | KIAA0195 | 17 | 17 | 1 | 1 | 13 | 8 | 8 | 0.065 | 73781065 | 73467881 | tier1 | CDS-5UTR | 19261 | NA | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | SAP30BP|KIAA0195 | SAP30BP | KIAA0195 | 17 | 17 | 1 | 1 | 4 | 5 | 5 | 0.012 | 73664705 | 73467881 | tier1 | CDS-5UTR | 15306 | NA | 0 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | ZNF618|KIAA0195 | ZNF618 | KIAA0195 | 9 | 17 | 1 | 1 | 19 | 17 | 15 | 1.8 | 116638693 | 73467881 | tier1 | CDS-5UTR | 20592 | NA | 0 |
| CESC | TCGA-VS-A957-01A | TCGA-VS-A957 | SRGAP2|KCNJ10 | SRGAP2 | KCNJ10 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.093 | 206610392 | 160012322 | tier3 | NA | 16847 | NA | 0 |
| LUAD | TCGA-49-4512-01A | TCGA-49-4512 | RRBP1|CHID1 | RRBP1 | CHID1 | 20 | 11 | -1 | -1 | 7 | 6 | 5 | 0.052 | 17614105 | 893519 | tier1 | Out-of-frame | 15118 | non-validated | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | EEA1|UBE2N | EEA1 | UBE2N | 12 | 12 | -1 | -1 | 12 | 57 | 55 | 1.3 | 93322819 | 93805075 | tier1 | In-frame | 5285 | NA | 0.37563 |
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