Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-YL-A9WK-01A | TCGA-YL-A9WK | PCNP|ATR | PCNP | ATR | 3 | 3 | 1 | -1 | 36 | 60 | 59 | 0.056 | 101298848 | 142185375 | tier1 | In-frame | 12426 | NA | 0.37133 |
| PRAD | TCGA-VN-A88M-01A | TCGA-VN-A88M | WWTR1|ATR | WWTR1 | ATR | 3 | 3 | -1 | -1 | 60 | 75 | 68 | 0.42 | 149374663 | 142168444 | tier1 | Out-of-frame | 19947 | NA | 0 |
| LUSC | TCGA-85-7698-01A | TCGA-85-7698 | IGSF3|PARL | IGSF3 | PARL | 1 | 3 | -1 | -1 | 18 | 18 | 13 | 1.3 | 117122014 | 183547497 | tier1 | Out-of-frame | 8132 | NA | 0.34731 |
| ESCA | TCGA-XP-A8T8-01A | TCGA-XP-A8T8 | GATAD2A|CHST1 | GATAD2A | CHST1 | 19 | 11 | 1 | -1 | 7 | 17 | 14 | 0.56 | 19576423 | 45674156 | tier1 | CDS-5UTR | 6973 | NA | 0.36789 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | PARD6G|CHST1 | PARD6G | CHST1 | 18 | 11 | -1 | -1 | 17 | 6 | 6 | 0.11 | 77960593 | 45674156 | tier1 | CDS-5UTR | 12288 | NA | 0.37382 |
| LGG | TCGA-DH-5142-01A | TCGA-DH-5142 | CCDC61|CHST1 | CCDC61 | CHST1 | 19 | 11 | 1 | -1 | 18 | 5 | 5 | 0.18 | 46506424 | 45674156 | tier1 | CDS-5UTR | 3173 | NA | 0.35345 |
| LIHC | TCGA-DD-AADB-01A | TCGA-DD-AADB | EIF1AD|CATSPER1 | EIF1AD | CATSPER1 | 11 | 11 | -1 | -1 | 2 | 2 | 2 | 3.3 | 65766821 | 65784645 | tier3 | In-frame | 5415 | NA | 0.36476 |
| BRCA | TCGA-E2-A15S-01A | TCGA-E2-A15S | PAX5|TMEM9B | PAX5 | TMEM9B | 9 | 11 | -1 | -1 | 3 | 2 | 2 | 0.63 | 37033983 | 8977845 | tier1 | Out-of-frame | 12322 | NA | 0.36546 |
| LUSC | TCGA-56-8625-01A | TCGA-56-8625 | ST5|TMEM9B | ST5 | TMEM9B | 11 | 11 | -1 | -1 | 17 | 10 | 7 | 0.002 | 8832794 | 8983730 | tier1 | 5UTR-CDS | 16946 | NA | 0 |
| BLCA | TCGA-FD-A3B5-01A | TCGA-FD-A3B5 | CNBD1|PTPN2 | CNBD1 | PTPN2 | 8 | 18 | 1 | -1 | 5 | 4 | 4 | 0.45 | 88366014 | 12785843 | tier1 | Out-of-frame | 3902 | NA | 0.37339 |
| PCPG | TCGA-RW-A67Y-01A | TCGA-RW-A67Y | SPIRE1|PTPN2 | SPIRE1 | PTPN2 | 18 | 18 | -1 | -1 | 5 | 14 | 13 | 0.46 | 12493071 | 12794484 | tier1 | Out-of-frame | 16734 | NA | 0 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | TGFBRAP1|DPP10 | TGFBRAP1 | DPP10 | 2 | 2 | -1 | 1 | 9 | 8 | 7 | 1.3 | 105912813 | 116066815 | tier1 | In-frame | 17747 | NA | 0 |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | ARHGEF17|P2RY2 | ARHGEF17 | P2RY2 | 11 | 11 | 1 | 1 | 3 | 1 | 1 | 0.21 | 73022875 | 72945201 | tier2 | CDS-5UTR | 1304 | NA | 0.3772 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | C12orf49|SLC35E3 | C12orf49 | SLC35E3 | 12 | 12 | -1 | 1 | 3 | 9 | 7 | 0.14 | 117175595 | 69145812 | tier1 | In-frame | 2423 | NA | 0 |
| LUAD | TCGA-78-8662-01A | TCGA-78-8662 | YEATS4|SLC35E3 | YEATS4 | SLC35E3 | 12 | 12 | 1 | 1 | 2 | 3 | 2 | 0.021 | 69759664 | 69152937 | tier3 | In-frame | 20031 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | TMTC3|SLC35E3 | TMTC3 | SLC35E3 | 12 | 12 | 1 | 1 | 9 | 4 | 4 | 0.11 | 88536264 | 69152937 | tier1 | 5UTR-CDS | 18315 | validated | 0 |
| HNSC | TCGA-CV-5979-01A | TCGA-CV-5979 | NUMA1|SFN | NUMA1 | SFN | 11 | 1 | -1 | 1 | 2 | 2 | 2 | 0.028 | 71732272 | 27189704 | tier4 | NA | 11893 | NA | 0.36532 |
| HNSC | TCGA-CN-6998-01A | TCGA-CN-6998 | PRRC2A|SFN | PRRC2A | SFN | 6 | 1 | 1 | 1 | 3 | 1 | 1 | 1.1 | 31599597 | 27189704 | tier4 | In-frame | 13637 | NA | 0.36223 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | TBC1D8|CREG2 | TBC1D8 | CREG2 | 2 | 2 | -1 | -1 | 18 | 6 | 5 | 1.5 | 101706716 | 101971828 | tier1 | Out-of-frame | 17503 | NA | 0 |
| BLCA | TCGA-KQ-A41P-01A | TCGA-KQ-A41P | STARD7|LRRN1 | STARD7 | LRRN1 | 2 | 3 | -1 | 1 | 3 | 3 | 3 | 1.6 | 96858980 | 3886048 | tier1 | CDS-5UTR | 17012 | NA | 0 |
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