Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2938-03A | TCGA-AB-2938 | ZBTB7A|TNK1 | ZBTB7A | TNK1 | 19 | 17 | -1 | 1 | 216 | 163 | 148 | 0.13 | 4053969 | 7286155 | tier1 | CDS-5UTR | 20121 | NA | 0 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | SLC35G6|SLC16A13 | SLC35G6 | SLC16A13 | 17 | 17 | 1 | 1 | 26 | 22 | 21 | 1.4 | 7399392 | 6941471 | tier1 | In-frame | 16169 | NA | 0 |
| CESC | TCGA-LP-A5U2-01A | TCGA-LP-A5U2 | KPNA1|CHRNA9 | KPNA1 | CHRNA9 | 3 | 4 | -1 | 1 | 20 | 18 | 17 | 0.55 | 122233604 | 40350899 | tier1 | 5UTR-CDS | 9093 | NA | 0.37399 |
| PRAD | TCGA-EJ-5496-01A | TCGA-EJ-5496 | GOLPH3|SLC6A19 | GOLPH3 | SLC6A19 | 5 | 5 | -1 | 1 | 9 | 7 | 6 | 1.7 | 32173916 | 1219018 | tier1 | In-frame | 7282 | NA | 0.34 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | SEMA5A|SLC6A19 | SEMA5A | SLC6A19 | 5 | 5 | -1 | 1 | 94 | 37 | 30 | 0.18 | 9066533 | 1208861 | tier1 | In-frame | 15566 | validated | 0 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | FAM134B|SLC6A19 | FAM134B | SLC6A19 | 5 | 5 | -1 | 1 | 2 | 6 | 5 | 2.1 | 16481118 | 1208861 | tier2 | In-frame | 6046 | NA | 0.33992 |
| LUAD | TCGA-95-7043-01A | TCGA-95-7043 | NIPBL|ATP2A2 | NIPBL | ATP2A2 | 5 | 12 | 1 | 1 | 5 | 11 | 10 | 0.072 | 36877280 | 110720409 | tier1 | 5UTR-CDS | 11553 | NA | 0.37414 |
| CESC | TCGA-ZJ-AAXB-01A | TCGA-ZJ-AAXB | GALNT11|CNTNAP2 | GALNT11 | CNTNAP2 | 7 | 7 | 1 | 1 | 4 | 1 | 1 | 0.079 | 151722969 | 147259230 | tier2 | 5UTR-CDS | 6914 | NA | 0.36223 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | ST7|CNTNAP2 | ST7 | CNTNAP2 | 7 | 7 | 1 | 1 | 15 | 2 | 2 | 1 | 116849991 | 147869334 | tier1 | In-frame | 16960 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | UBAP2|LINGO2 | UBAP2 | LINGO2 | 9 | 9 | -1 | -1 | 7 | 4 | 3 | 0.13 | 33932560 | 27950704 | tier1 | CDS-5UTR | 19044 | NA | 0 |
| GBM | TCGA-06-0211-02A | TCGA-06-0211 | SHB|LINGO2 | SHB | LINGO2 | 9 | 9 | -1 | -1 | 3 | 6 | 4 | 1.1 | 38016008 | 27950704 | tier1 | CDS-5UTR | 15871 | non-validated | 0 |
| PRAD | TCGA-HC-8265-01B | TCGA-HC-8265 | ELK4|SLC26A9 | ELK4 | SLC26A9 | 1 | 1 | -1 | -1 | 8 | 22 | 11 | 0.012 | 205592804 | 205904966 | tier2 | CDS-5UTR | 5507 | NA | 0.37214 |
| PRAD | TCGA-J9-A52C-01A | TCGA-J9-A52C | LYSMD1|MFSD4 | LYSMD1 | MFSD4 | 1 | 1 | -1 | 1 | 2 | 2 | 2 | 0.36 | 151138223 | 205566908 | tier4 | Out-of-frame | 9705 | NA | 0.34044 |
| LUSC | TCGA-22-5489-01A | TCGA-22-5489 | CRYBG3|IL20RB | CRYBG3 | IL20RB | 3 | 3 | 1 | 1 | 5 | 3 | 3 | 4.2 | 97600063 | 136728955 | tier1 | In-frame | 4250 | NA | 0.3424 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | BTBD11|CMKLR1 | BTBD11 | CMKLR1 | 12 | 12 | 1 | -1 | 19 | 19 | 19 | 0.31 | 107975081 | 108687441 | tier1 | CDS-5UTR | 2259 | validated | 0.3525 |
| BRCA | TCGA-A2-A0ST-01A | TCGA-A2-A0ST | CMTM8|NR1D2 | CMTM8 | NR1D2 | 3 | 3 | 1 | 1 | 3 | 4 | 4 | 0.015 | 32280611 | 23996028 | tier1 | Out-of-frame | 3898 | NA | 0.36268 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | RNH1|HRAS | RNH1 | HRAS | 11 | 11 | -1 | -1 | 203 | 133 | 124 | 0.13 | 507113 | 533944 | tier1 | 5UTR-CDS | 14859 | non-validated | 0 |
| ESCA | TCGA-LN-A8I0-01A | TCGA-LN-A8I0 | CDIPT|SEZ6L2 | CDIPT | SEZ6L2 | 16 | 16 | -1 | -1 | 2 | 15 | 11 | 0.007 | 29871902 | 29885050 | tier3 | Out-of-frame | 3396 | NA | 0.35188 |
| ESCA | TCGA-V5-AASX-01A | TCGA-V5-AASX | FAM35A|SEZ6L2 | FAM35A | SEZ6L2 | 10 | 16 | 1 | -1 | 5 | 13 | 11 | 0.45 | 88856746 | 29897070 | tier1 | 5UTR-CDS | 6161 | NA | 0.35133 |
| HNSC | TCGA-BA-A4II-01A | TCGA-BA-A4II | KLHDC4|CA5A | KLHDC4 | CA5A | 16 | 16 | -1 | -1 | 4 | 2 | 2 | 0.26 | 87799398 | 87936126 | tier1 | In-frame | 9049 | NA | 0.3522 |
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