Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | DOCK3|SMARCC1 | DOCK3 | SMARCC1 | 3 | 3 | 1 | -1 | 4 | 12 | 12 | 1.9 | 50712731 | 47663831 | tier1 | Out-of-frame | 5031 | non-validated | 0.38088 |
| LUAD | TCGA-44-8117-01A | TCGA-44-8117 | UQCRC1|SMARCC1 | UQCRC1 | SMARCC1 | 3 | 3 | -1 | -1 | 29 | 13 | 11 | 1.6 | 48646595 | 47632327 | tier1 | Out-of-frame | 19289 | NA | 0 |
| LUAD | TCGA-05-4395-01A | TCGA-05-4395 | ANKRD12|PTPRM | ANKRD12 | PTPRM | 18 | 18 | 1 | 1 | 20 | 6 | 6 | 2 | 9136963 | 8394474 | tier1 | 5UTR-CDS | 962 | non-validated | 0.37421 |
| SKCM | TCGA-EE-A2GB-06A | TCGA-EE-A2GB | FAM59A|PTPRM | FAM59A | PTPRM | 18 | 18 | -1 | 1 | 30 | 20 | 19 | 0.11 | 29972858 | 7888104 | tier1 | In-frame | 6194 | NA | 0.37361 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | AMMECR1L|TNFRSF10C | AMMECR1L | TNFRSF10C | 2 | 8 | -1 | 1 | 13 | 8 | 8 | 0.99 | 128641777 | 22969233 | tier1 | 5UTR-CDS | 877 | NA | 0.36021 |
| BRCA | TCGA-3C-AAAU-01A | TCGA-3C-AAAU | SIN3A|CSPG4 | SIN3A | CSPG4 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.047 | 75743764 | 75985574 | tier1 | 5UTR-CDS | 15932 | NA | 0 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | AKAP13|CHD2 | AKAP13 | CHD2 | 15 | 15 | 1 | 1 | 9 | 1 | 1 | 0.39 | 86077111 | 93555575 | tier2 | Out-of-frame | 727 | NA | 0.38221 |
| LUSC | TCGA-37-5819-01A | TCGA-37-5819 | YTHDC1|SULT1B1 | YTHDC1 | SULT1B1 | 4 | 4 | -1 | -1 | 4 | 2 | 2 | 1.1 | 69188467 | 70626289 | tier1 | NA | 20047 | NA | 0 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | ZBTB48|TAS1R1 | ZBTB48 | TAS1R1 | 1 | 1 | 1 | 1 | 14 | 2 | 2 | 0.021 | 6648904 | 6637010 | tier1 | In-frame | 20117 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | MKL1|WFIKKN2 | MKL1 | WFIKKN2 | 22 | 17 | -1 | 1 | 10 | 7 | 6 | 2 | 40990678 | 48916860 | tier1 | 5UTR-CDS | 10411 | NA | 0.36641 |
| PAAD | TCGA-XD-AAUI-01A | TCGA-XD-AAUI | DDX52|STAT5B | DDX52 | STAT5B | 17 | 17 | -1 | -1 | 5 | 3 | 3 | 4 | 35988605 | 40354826 | tier1 | In-frame | 4672 | NA | 0.37796 |
| BLCA | TCGA-DK-A1A3-01A | TCGA-DK-A1A3 | CEBPG|TDRD12 | CEBPG | TDRD12 | 19 | 19 | 1 | 1 | 11 | 9 | 9 | 0.042 | 33864801 | 33239382 | tier2 | 5UTR-CDS | 3491 | NA | 0.36049 |
| CESC | TCGA-DG-A2KM-01A | TCGA-DG-A2KM | ANKRD27|TDRD12 | ANKRD27 | TDRD12 | 19 | 19 | -1 | 1 | 22 | 16 | 14 | 0.61 | 33106564 | 33222631 | tier1 | In-frame | 979 | NA | 0.34299 |
| PRAD | TCGA-V1-A9O5-06A | TCGA-V1-A9O5 | LSM14A|TDRD12 | LSM14A | TDRD12 | 19 | 19 | 1 | 1 | 51 | 38 | 35 | 0.52 | 34706566 | 33263659 | tier1 | In-frame | 9631 | NA | 0.32971 |
| BRCA | TCGA-BH-A0AW-01A | TCGA-BH-A0AW | MED1|PHOSPHO1 | MED1 | PHOSPHO1 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 1.6 | 37579950 | 47304120 | tier2 | CDS-5UTR | 10159 | NA | 0.35679 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | SKIL|GPR160 | SKIL | GPR160 | 3 | 3 | 1 | 1 | 5 | 7 | 6 | 0.3 | 170079217 | 169756703 | tier1 | CDS-5UTR | 15986 | non-validated | 0 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | STIM1|GPR160 | STIM1 | GPR160 | 11 | 3 | 1 | 1 | 5 | 7 | 5 | 1 | 3877639 | 169756703 | tier1 | CDS-5UTR | 17036 | NA | 0 |
| KIRC | TCGA-B0-4833-01A | TCGA-B0-4833 | RBM14|CCS | RBM14 | CCS | 11 | 11 | 1 | 1 | 5 | 5 | 5 | 0.14 | 66393149 | 66361113 | tier1 | Out-of-frame | 14445 | NA | 0 |
| LUSC | TCGA-77-8153-01A | TCGA-77-8153 | INCENP|CCS | INCENP | CCS | 11 | 11 | 1 | 1 | 40 | 37 | 37 | 0.016 | 61908983 | 66372810 | tier1 | In-frame | 8230 | NA | 0.36066 |
| BRCA | TCGA-BH-A1EX-01A | TCGA-BH-A1EX | ZFX|KLHL15 | ZFX | KLHL15 | X | X | 1 | -1 | 46 | 25 | 24 | 0.49 | 24227157 | 24007147 | tier1 | Out-of-frame | 20294 | NA | 0 |
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