Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A278-01A | TCGA-C8-A278 | MLLT10|SNTG1 | MLLT10 | SNTG1 | 10 | 8 | 1 | 1 | 5 | 8 | 8 | 0.64 | 22024164 | 51415338 | tier1 | In-frame | 10511 | NA | 0.36927 |
| COAD | TCGA-D5-6922-01A | TCGA-D5-6922 | MLLT10|ASCC1 | MLLT10 | ASCC1 | 10 | 10 | 1 | -1 | 10 | 3 | 2 | 0.52 | 21906136 | 73892939 | tier1 | Out-of-frame | 10504 | NA | 0.36353 |
| LAML | TCGA-AB-2849-03A | TCGA-AB-2849 | MLLT10|PICALM | MLLT10 | PICALM | 10 | 11 | 1 | -1 | 7 | 21 | 18 | 0.66 | 21906136 | 85670103 | tier1 | In-frame | 10508 | NA | 0.36396 |
| LAML | TCGA-AB-2855-03A | TCGA-AB-2855 | MLLT10|PICALM | MLLT10 | PICALM | 10 | 11 | 1 | -1 | 3 | 9 | 9 | 0.66 | 21906136 | 85670103 | tier1 | In-frame | 10509 | NA | 0.36396 |
| LGG | TCGA-TQ-A7RV-01A | TCGA-TQ-A7RV | MLLT10|WAC | MLLT10 | WAC | 10 | 10 | 1 | 1 | 8 | 10 | 10 | 0.7 | 21906136 | 28824491 | tier1 | CDS-5UTR | 10512 | non-validated | 0.36642 |
| LIHC | TCGA-DD-A73G-01A | TCGA-DD-A73G | MLLT10|C10orf140 | MLLT10 | C10orf140 | 10 | 10 | 1 | -1 | 5 | 9 | 4 | 0.35 | 21906136 | 21812800 | tier1 | CDS-5UTR | 10505 | NA | 0 |
| LGG | TCGA-QH-A6CZ-01A | TCGA-QH-A6CZ | ADCYAP1R1|TYK2 | ADCYAP1R1 | TYK2 | 7 | 19 | 1 | -1 | 2 | 7 | 7 | 0.083 | 31151089 | 10491352 | tier3 | 3UTR-5UTR | 491 | NA | 0.38114 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | ADCYAP1R1|AQP1 | ADCYAP1R1 | AQP1 | 7 | 7 | 1 | 1 | 255 | 371 | 351 | 0.052 | 31092293 | 30961681 | tier1 | 5UTR-CDS | 489 | NA | 0.37229 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | ADCYAP1R1|DFNA5 | ADCYAP1R1 | DFNA5 | 7 | 7 | 1 | -1 | 24 | 20 | 18 | 0.053 | 31132349 | 24750007 | tier1 | Out-of-frame | 490 | NA | 0.36883 |
| UCEC | TCGA-AJ-A3BH-01A | TCGA-AJ-A3BH | FGF20|RP1 | FGF20 | RP1 | 8 | 8 | -1 | 1 | 9 | 3 | 3 | 5.2 | 16853164 | 55651503 | tier1 | In-frame | 6452 | NA | 0.35828 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | NRD1|USP24 | NRD1 | USP24 | 1 | 1 | -1 | -1 | 2 | 5 | 4 | 1.5 | 52343947 | 55573103 | tier3 | Out-of-frame | 11738 | non-validated | 0.35788 |
| LGG | TCGA-E1-A7YL-01A | TCGA-E1-A7YL | NRD1|VPS53 | NRD1 | VPS53 | 1 | 17 | -1 | -1 | 23 | 24 | 13 | 0.012 | 52258049 | 440416 | tier1 | In-frame | 11739 | NA | 0.354 |
| LGG | TCGA-HT-A5RA-01A | TCGA-HT-A5RA | TP73|CEP104 | TP73 | CEP104 | 1 | 1 | 1 | -1 | 2 | 2 | 2 | 0.34 | 3599744 | 3768985 | tier2 | CDS-5UTR | 18478 | NA | 0 |
| BRCA | TCGA-D8-A1Y0-01A | TCGA-D8-A1Y0 | SLC1A3|METTL15 | SLC1A3 | METTL15 | 5 | 11 | 1 | 1 | 2 | 7 | 7 | 0.054 | 36671335 | 28311753 | tier3 | In-frame | 16047 | NA | 0 |
| LGG | TCGA-DU-6397-01A | TCGA-DU-6397 | SLC1A3|RABEP1 | SLC1A3 | RABEP1 | 5 | 17 | 1 | 1 | 2 | 10 | 7 | 0.8 | 36688434 | 5283828 | tier4 | NA | 16048 | non-validated | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SLC1A3|C20orf196 | SLC1A3 | C20orf196 | 5 | 20 | 1 | 1 | 37 | 26 | 25 | 0.86 | 36608706 | 5753508 | tier1 | CDS-5UTR | 16044 | validated | 0 |
| LUSC | TCGA-21-A5DI-01A | TCGA-21-A5DI | SLC1A3|CDH12 | SLC1A3 | CDH12 | 5 | 5 | 1 | -1 | 2 | 1 | 1 | 2.2 | 36608706 | 21765208 | tier3 | In-frame | 16045 | NA | 0 |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | SLC1A3|MAPKAP1 | SLC1A3 | MAPKAP1 | 5 | 9 | 1 | -1 | 5 | 4 | 4 | 0.15 | 36608706 | 128420078 | tier1 | In-frame | 16046 | NA | 0 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | MKNK1|KIAA0494 | MKNK1 | KIAA0494 | 1 | 1 | -1 | -1 | 9 | 4 | 4 | 1.9 | 47082383 | 47182115 | tier4 | 5UTR-CDS | 10427 | NA | 0.37768 |
| PRAD | TCGA-V1-A9OH-01A | TCGA-V1-A9OH | CDC14A|DEFB135 | CDC14A | DEFB135 | 1 | 8 | 1 | 1 | 2 | 2 | 2 | 0.4 | 100921048 | 11841930 | tier3 | In-frame | 3316 | NA | 0.35001 |
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