Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | ZNF532|MALT1 | ZNF532 | MALT1 | 18 | 18 | 1 | 1 | 11 | 15 | 15 | 0.17 | 56621031 | 56400629 | tier1 | Out-of-frame | 20541 | validated | 0 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | NEBL|PRL | NEBL | PRL | 10 | 6 | -1 | -1 | 4 | 1 | 1 | 0.01 | 21101698 | 22292874 | tier3 | Out-of-frame | 11318 | NA | 0.37142 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | HGSNAT|MBOAT1 | HGSNAT | MBOAT1 | 8 | 6 | 1 | -1 | 2 | 2 | 2 | 0.17 | 43028886 | 20153000 | tier2 | Out-of-frame | 7737 | NA | 0.3293 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | SF3A2|AZU1 | SF3A2 | AZU1 | 19 | 19 | 1 | 1 | 175 | 50 | 45 | 0.1 | 2243543 | 828230 | tier1 | Out-of-frame | 15724 | NA | 0 |
| BRCA | TCGA-BH-A204-01A | TCGA-BH-A204 | RNF122|NEGR1 | RNF122 | NEGR1 | 8 | 1 | -1 | -1 | 43 | 19 | 18 | 0.39 | 33424217 | 71873253 | tier1 | In-frame | 14751 | NA | 0 |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | MYO6|NEGR1 | MYO6 | NEGR1 | 6 | 1 | 1 | -1 | 10 | 5 | 5 | 0.15 | 76558248 | 72163822 | tier4 | In-frame | 10999 | NA | 0.37587 |
| BLCA | TCGA-K4-A3WV-01A | TCGA-K4-A3WV | LRRC16A|CTSW | LRRC16A | CTSW | 6 | 11 | 1 | 1 | 18 | 10 | 9 | 0.9 | 25581667 | 65648878 | tier1 | Out-of-frame | 9563 | NA | 0.34644 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | CS|MUCL1 | CS | MUCL1 | 12 | 12 | -1 | 1 | 4 | 5 | 5 | 0.05 | 56685415 | 55251977 | tier1 | NA | 4255 | NA | 0.34979 |
| LUAD | TCGA-91-6840-01A | TCGA-91-6840 | LARP4|MUCL1 | LARP4 | MUCL1 | 12 | 12 | 1 | 1 | 149 | 115 | 110 | 100 | 50794811 | 55248900 | tier1 | Out-of-frame | 9235 | non-validated | 0.33715 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | CCDC127|MUCL1 | CCDC127 | MUCL1 | 5 | 12 | -1 | 1 | 21 | 21 | 13 | 0.024 | 216844 | 55250554 | tier1 | In-frame | 3111 | non-validated | 0.34652 |
| BRCA | TCGA-BH-A1EW-01A | TCGA-BH-A1EW | CNOT2|PDE3A | CNOT2 | PDE3A | 12 | 12 | 1 | 1 | 3 | 18 | 17 | 1.3 | 70637260 | 20709594 | tier1 | 5UTR-CDS | 3930 | NA | 0.349 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | ZNF318|PDE3A | ZNF318 | PDE3A | 6 | 12 | -1 | 1 | 15 | 25 | 20 | 0.62 | 43310414 | 20709594 | tier1 | In-frame | 20459 | NA | 0 |
| LUAD | TCGA-MN-A4N5-01A | TCGA-MN-A4N5 | PHKB|PDE3A | PHKB | PDE3A | 16 | 12 | 1 | 1 | 7 | 8 | 8 | 0.43 | 47703328 | 20799424 | tier1 | Out-of-frame | 12747 | NA | 0.354 |
| CESC | TCGA-VS-A9UO-01A | TCGA-VS-A9UO | SNRNP40|COL6A5 | SNRNP40 | COL6A5 | 1 | 3 | -1 | 1 | 3 | 5 | 4 | 0.15 | 31754221 | 130187639 | tier1 | Out-of-frame | 16498 | NA | 0 |
| SKCM | TCGA-WE-AAA3-06A | TCGA-WE-AAA3 | LACTB2|CYP7B1 | LACTB2 | CYP7B1 | 8 | 8 | -1 | -1 | 5 | 5 | 4 | 1.4 | 71569991 | 65537096 | tier1 | In-frame | 9179 | NA | 0.34443 |
| HNSC | TCGA-CN-6988-01A | TCGA-CN-6988 | CBFB|CES4A | CBFB | CES4A | 16 | 16 | 1 | 1 | 6 | 6 | 6 | 0.89 | 67070658 | 67034541 | tier1 | Out-of-frame | 3056 | NA | 0.35328 |
| BRCA | TCGA-E2-A15O-01A | TCGA-E2-A15O | MRPL21|SSH3 | MRPL21 | SSH3 | 11 | 11 | -1 | 1 | 92 | 57 | 53 | 0.45 | 68663983 | 67074309 | tier1 | In-frame | 10652 | NA | 0.36101 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | PPP6R3|SSH3 | PPP6R3 | SSH3 | 11 | 11 | 1 | 1 | 39 | 36 | 35 | 0.15 | 68287119 | 67074309 | tier1 | 5UTR-CDS | 13471 | NA | 0.35223 |
| SKCM | TCGA-FR-A2OS-01A | TCGA-FR-A2OS | CTCF|CES2 | CTCF | CES2 | 16 | 16 | 1 | 1 | 43 | 16 | 13 | 1.9 | 67605167 | 66971940 | tier1 | 5UTR-CDS | 4310 | NA | 0.37032 |
| BRCA | TCGA-D8-A1JI-01A | TCGA-D8-A1JI | CADPS2|DHCR7 | CADPS2 | DHCR7 | 7 | 11 | -1 | -1 | 11 | 7 | 6 | 0.58 | 122377009 | 71158780 | tier2 | CDS-5UTR | 2892 | NA | 0.3615 |
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