Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | C2CD3|P2RY6 | C2CD3 | P2RY6 | 11 | 11 | -1 | 1 | 14 | 11 | 9 | 0.051 | 73829273 | 73007530 | tier1 | CDS-5UTR | 2680 | validated | 0.35488 |
| ESCA | TCGA-L5-A4OW-01A | TCGA-L5-A4OW | PGS1|BPTF | PGS1 | BPTF | 17 | 17 | 1 | 1 | 15 | 183 | 163 | 3.1 | 76400170 | 65916131 | tier1 | In-frame | 12672 | NA | 0.35903 |
| PAAD | TCGA-HZ-A4BH-01A | TCGA-HZ-A4BH | YPEL2|BPTF | YPEL2 | BPTF | 17 | 17 | 1 | 1 | 13 | 3 | 3 | 0.05 | 57430887 | 65850056 | tier1 | Out-of-frame | 20040 | NA | 0 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | EEA1|PAH | EEA1 | PAH | 12 | 12 | -1 | -1 | 10 | 8 | 8 | 1.5 | 93258636 | 103249110 | tier1 | In-frame | 5282 | NA | 0.37211 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | ANAPC7|PAH | ANAPC7 | PAH | 12 | 12 | -1 | -1 | 4 | 4 | 3 | 1.6 | 110841332 | 103271328 | tier1 | Out-of-frame | 893 | NA | 0.3659 |
| PRAD | TCGA-HC-7736-01A | TCGA-HC-7736 | TMEM132D|PAH | TMEM132D | PAH | 12 | 12 | -1 | -1 | 3 | 1 | 1 | 0.85 | 129694065 | 103306676 | tier2 | In-frame | 17963 | NA | 0 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | SART3|PAH | SART3 | PAH | 12 | 12 | -1 | -1 | 45 | 14 | 4 | 0.59 | 108941663 | 103288696 | tier1 | Out-of-frame | 15318 | validated | 0 |
| BRCA | TCGA-GM-A2DL-01A | TCGA-GM-A2DL | NEDD4L|BCL2 | NEDD4L | BCL2 | 18 | 18 | 1 | -1 | 6 | 1 | 1 | 0.65 | 55833093 | 60795992 | tier2 | Out-of-frame | 11334 | NA | 0.38391 |
| LGG | TCGA-DB-A4XF-01A | TCGA-DB-A4XF | ATRX|BCL2 | ATRX | BCL2 | X | 18 | -1 | -1 | 55 | 25 | 23 | 0.24 | 77041468 | 60795992 | tier1 | Out-of-frame | 1794 | NA | 0.38384 |
| PRAD | TCGA-EJ-5510-01A | TCGA-EJ-5510 | ARHGEF7|PTEN | ARHGEF7 | PTEN | 13 | 10 | 1 | 1 | 8 | 3 | 3 | 0.042 | 111896641 | 89685270 | tier1 | In-frame | 1335 | NA | 0.38531 |
| SKCM | TCGA-D3-A2JA-06A | TCGA-D3-A2JA | SHC2|PTEN | SHC2 | PTEN | 19 | 10 | -1 | 1 | 2 | 3 | 3 | 0.019 | 438718 | 89685270 | tier4 | Out-of-frame | 15882 | NA | 0 |
| KICH | TCGA-KL-8328-01A | TCGA-KL-8328 | C20orf194|ADRA1D | C20orf194 | ADRA1D | 20 | 20 | -1 | -1 | 6 | 3 | 3 | 0.054 | 3388122 | 4202777 | tier1 | Out-of-frame | 2640 | validated | 0 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | EIF2S2|ADRA1D | EIF2S2 | ADRA1D | 20 | 20 | -1 | -1 | 6 | 32 | 32 | 0.021 | 32678323 | 4202777 | tier1 | In-frame | 5443 | NA | 0.37677 |
| LIHC | TCGA-FV-A3I0-01A | TCGA-FV-A3I0 | DTNA|AQP4 | DTNA | AQP4 | 18 | 18 | 1 | -1 | 13 | 7 | 7 | 1.2 | 32073478 | 24442560 | tier1 | 5UTR-CDS | 5154 | non-validated | 0.37293 |
| HNSC | TCGA-CN-A641-01A | TCGA-CN-A641 | GLT25D1|CYP4F11 | GLT25D1 | CYP4F11 | 19 | 19 | 1 | -1 | 8 | 7 | 6 | 0.003 | 17671274 | 16040411 | tier1 | In-frame | 7124 | NA | 0.33912 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | AP1M1|CYP4F11 | AP1M1 | CYP4F11 | 19 | 19 | 1 | -1 | 4 | 3 | 3 | 0.083 | 16319988 | 16045219 | tier1 | CDS-5UTR | 1064 | NA | 0.36573 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | ATAD1|JMJD1C | ATAD1 | JMJD1C | 10 | 10 | -1 | -1 | 3 | 10 | 10 | 0.12 | 89530709 | 64968995 | tier2 | In-frame | 1571 | NA | 0.37149 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | PCDHGA6|JMJD1C | PCDHGA6 | JMJD1C | 5 | 10 | 1 | -1 | 2 | 2 | 2 | 0.41 | 140756074 | 65024524 | tier2 | In-frame | 12389 | NA | 0.37197 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | QARS|USP19 | QARS | USP19 | 3 | 3 | -1 | -1 | 86 | 63 | 61 | 0.038 | 49135625 | 49150062 | tier1 | In-frame | 14001 | validated | 0 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | RPL19|CCL11 | RPL19 | CCL11 | 17 | 17 | 1 | 1 | 11 | 926 | 894 | 0.02 | 37356602 | 32614115 | tier1 | Out-of-frame | 14991 | NA | 0 |
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