Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A1AU-01A | TCGA-AR-A1AU | FOXO3|CHD7 | FOXO3 | CHD7 | 6 | 8 | 1 | 1 | 2 | 1 | 1 | 0.018 | 108883032 | 61653818 | tier2 | CDS-5UTR | 6680 | NA | 0.37033 |
| COAD | TCGA-F4-6807-01A | TCGA-F4-6807 | TCF7L2|CHD7 | TCF7L2 | CHD7 | 10 | 8 | 1 | 1 | 11 | 13 | 11 | 0.12 | 114799885 | 61693559 | tier4 | In-frame | 17602 | NA | 0 |
| COAD | TCGA-4T-AA8H-01A | TCGA-4T-AA8H | TOX|CHD7 | TOX | CHD7 | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 0.44 | 60031445 | 61693559 | tier3 | In-frame | 18459 | NA | 0 |
| LUAD | TCGA-55-1595-01A | TCGA-55-1595 | C17orf63|CHD7 | C17orf63 | CHD7 | 17 | 8 | -1 | 1 | 12 | 4 | 4 | 0.037 | 27139227 | 61653818 | tier1 | 5UTR-5UTR | 2509 | NA | 0 |
| OV | TCGA-20-0991-01A | TCGA-20-0991 | HUWE1|CLCN5 | HUWE1 | CLCN5 | X | X | -1 | 1 | 2 | 6 | 6 | 0.036 | 53600710 | 49806925 | tier2 | Out-of-frame | 8039 | NA | 0.3724 |
| LIHC | TCGA-MI-A75I-01A | TCGA-MI-A75I | TMEM63B|POLR1C | TMEM63B | POLR1C | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 0.55 | 44108835 | 43488013 | tier3 | Out-of-frame | 18044 | NA | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | ZFAND3|POLR1C | ZFAND3 | POLR1C | 6 | 6 | 1 | 1 | 7 | 4 | 3 | 0.56 | 37897775 | 43485044 | tier1 | Out-of-frame | 20244 | NA | 0 |
| BLCA | TCGA-GD-A2C5-01A | TCGA-GD-A2C5 | LRBA|RXFP1 | LRBA | RXFP1 | 4 | 4 | -1 | 1 | 5 | 2 | 1 | 0.41 | 151509200 | 159549790 | tier2 | Out-of-frame | 9481 | validated | 0.36375 |
| UCS | TCGA-NA-A4QY-01A | TCGA-NA-A4QY | FNIP2|RXFP1 | FNIP2 | RXFP1 | 4 | 4 | 1 | 1 | 3 | 2 | 2 | 0.27 | 159690471 | 159559160 | tier1 | In-frame | 6630 | NA | 0.35645 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | VAPB|BCL2L1 | VAPB | BCL2L1 | 20 | 20 | 1 | -1 | 34 | 17 | 15 | 0.74 | 56964573 | 30310133 | tier1 | CDS-5UTR | 19504 | NA | 0 |
| COAD | TCGA-A6-2675-01A | TCGA-A6-2675 | YWHAB|BCL2L1 | YWHAB | BCL2L1 | 20 | 20 | 1 | -1 | 26 | 13 | 12 | 0.29 | 43514527 | 30310133 | tier1 | 5UTR-5UTR | 20051 | NA | 0 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | CBFA2T2|BCL2L1 | CBFA2T2 | BCL2L1 | 20 | 20 | 1 | -1 | 8 | 15 | 15 | 0.72 | 32078107 | 30253889 | tier1 | 5UTR-CDS | 3048 | NA | 0.36944 |
| LUAD | TCGA-49-6743-01A | TCGA-49-6743 | DCHS2|FGG | DCHS2 | FGG | 4 | 4 | -1 | -1 | 217 | 151 | 133 | 0.013 | 155410456 | 155533353 | tier1 | In-frame | 4599 | NA | 0.36468 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | ARFIP1|FGB | ARFIP1 | FGB | 4 | 4 | 1 | 1 | 13 | 9 | 8 | 0.069 | 153750878 | 155486960 | tier1 | In-frame | 1203 | NA | 0.36997 |
| OV | TCGA-36-1574-01A | TCGA-36-1574 | DDX60L|DSCAM | DDX60L | DSCAM | 4 | 21 | -1 | -1 | 11 | 1 | 1 | 0.17 | 169374275 | 41559914 | tier2 | In-frame | 4680 | non-validated | 0.37729 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | TCF12|DSCAM | TCF12 | DSCAM | 15 | 21 | 1 | -1 | 3 | 6 | 5 | 0.53 | 57384089 | 41741172 | tier4 | In-frame | 17580 | NA | 0 |
| SARC | TCGA-DX-A6YR-01A | TCGA-DX-A6YR | NRIP1|DSCAM | NRIP1 | DSCAM | 21 | 21 | -1 | -1 | 3 | 10 | 10 | 0.055 | 16386665 | 41455933 | tier1 | 5UTR-CDS | 11752 | NA | 0.37912 |
| LUAD | TCGA-L9-A5IP-01A | TCGA-L9-A5IP | EIF2C3|PIK3CD | EIF2C3 | PIK3CD | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 2.5 | 36479649 | 9770482 | tier3 | CDS-5UTR | 5440 | NA | 0.36617 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | TNPO1|ENC1 | TNPO1 | ENC1 | 5 | 5 | 1 | -1 | 11 | 9 | 9 | 0.18 | 72168547 | 73933526 | tier1 | NA | 18361 | NA | 0 |
| SKCM | TCGA-EE-A20C-06A | TCGA-EE-A20C | POLD3|ENC1 | POLD3 | ENC1 | 11 | 5 | 1 | -1 | 2 | 1 | 1 | 2.6 | 74324055 | 73933526 | tier3 | NA | 13148 | NA | 0.37404 |
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