Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-24-1616-01A | TCGA-24-1616 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 2 | 5 | 5 | 0.019 | 14153601 | 14141522 | tier2 | Out-of-frame | 8183 | NA | 0.36098 |
| SKCM | TCGA-DA-A3F5-06A | TCGA-DA-A3F5 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 43 | 27 | 24 | 0.019 | 14143315 | 14141522 | tier1 | Out-of-frame | 8188 | non-validated | 0.36098 |
| STAD | TCGA-CG-4466-01A | TCGA-CG-4466 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 5 | 10 | 9 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8186 | NA | 0.36098 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | DTNB|RBKS | DTNB | RBKS | 2 | 2 | -1 | -1 | 8 | 5 | 4 | 2.1 | 25799707 | 28081438 | tier1 | Out-of-frame | 5163 | NA | 0.36356 |
| HNSC | TCGA-CV-7413-01A | TCGA-CV-7413 | SUPT7L|RBKS | SUPT7L | RBKS | 2 | 2 | -1 | -1 | 6 | 6 | 4 | 0.31 | 27883851 | 28004655 | tier1 | Out-of-frame | 17197 | NA | 0 |
| KIRP | TCGA-BQ-5889-01A | TCGA-BQ-5889 | SUPT7L|RBKS | SUPT7L | RBKS | 2 | 2 | -1 | -1 | 10 | 8 | 4 | 0.31 | 27885046 | 28004655 | tier1 | Out-of-frame | 17196 | NA | 0 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | MRPL33|RBKS | MRPL33 | RBKS | 2 | 2 | 1 | -1 | 3 | 9 | 9 | 100 | 27997397 | 28004655 | tier1 | Out-of-frame | 10654 | NA | 0.33665 |
| OV | TCGA-29-1699-01A | TCGA-29-1699 | KIF3C|RBKS | KIF3C | RBKS | 2 | 2 | -1 | -1 | 2 | 11 | 10 | 1.3 | 26203242 | 28004655 | tier2 | In-frame | 9006 | NA | 0.35845 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | SNTG2|RBKS | SNTG2 | RBKS | 2 | 2 | 1 | -1 | 19 | 19 | 18 | 100 | 1320147 | 28055644 | tier1 | Out-of-frame | 16522 | NA | 0 |
| HNSC | TCGA-CN-6992-01A | TCGA-CN-6992 | ATP6V1E2|GRIK1 | ATP6V1E2 | GRIK1 | 2 | 21 | -1 | -1 | 3 | 3 | 3 | 0.89 | 46762952 | 31015289 | tier1 | 5UTR-CDS | 1760 | NA | 0.3616 |
| KIRP | TCGA-B9-A5W9-01A | TCGA-B9-A5W9 | PCBP3|GRIK1 | PCBP3 | GRIK1 | 21 | 21 | 1 | -1 | 3 | 1 | 1 | 0.28 | 47063782 | 30971257 | tier3 | 5UTR-CDS | 12371 | NA | 0.36357 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | SIM2|GRIK1 | SIM2 | GRIK1 | 21 | 21 | 1 | -1 | 2 | 3 | 3 | 0.57 | 38072221 | 31066382 | tier2 | In-frame | 15929 | NA | 0 |
| LUAD | TCGA-69-8453-01A | TCGA-69-8453 | TRAPPC10|GRIK1 | TRAPPC10 | GRIK1 | 21 | 21 | 1 | -1 | 8 | 5 | 5 | 0.26 | 45432441 | 31066382 | tier1 | In-frame | 18569 | NA | 0 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | SEC31A|MUC7 | SEC31A | MUC7 | 4 | 4 | -1 | 1 | 56 | 65 | 60 | 0.003 | 83778105 | 71337932 | tier1 | CDS-5UTR | 15525 | NA | 0 |
| OV | TCGA-25-1322-01A | TCGA-25-1322 | MOBKL1A|MUC7 | MOBKL1A | MUC7 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 0.18 | 71768267 | 71337932 | tier2 | CDS-5UTR | 10561 | NA | 0.35152 |
| UCS | TCGA-NA-A4QW-01A | TCGA-NA-A4QW | CNOT8|PROL1 | CNOT8 | PROL1 | 5 | 4 | 1 | 1 | 75 | 32 | 28 | 0.35 | 154244945 | 71275097 | tier1 | Out-of-frame | 3939 | NA | 0.3549 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | MEN1|CDC42BPG | MEN1 | CDC42BPG | 11 | 11 | -1 | -1 | 11 | 3 | 3 | 0.19 | 64572506 | 64608120 | tier1 | In-frame | 10252 | NA | 0.37601 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | RPTOR|GAA | RPTOR | GAA | 17 | 17 | 1 | 1 | 2 | 3 | 3 | 0.022 | 78519591 | 78079548 | tier3 | In-frame | 15106 | NA | 0 |
| OV | TCGA-09-1673-01A | TCGA-09-1673 | ZNF512|KCNK3 | ZNF512 | KCNK3 | 2 | 2 | 1 | 1 | 5 | 3 | 3 | 0.005 | 27840438 | 26950535 | tier1 | Out-of-frame | 20535 | NA | 0 |
| BRCA | TCGA-B6-A0RH-01A | TCGA-B6-A0RH | FBXW8|CHST11 | FBXW8 | CHST11 | 12 | 12 | 1 | 1 | 2 | 3 | 3 | 0.95 | 117426674 | 104995684 | tier2 | Out-of-frame | 6379 | NA | 0.36084 |
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