Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | ACTG2|ALK | ACTG2 | ALK | 2 | 2 | 1 | -1 | 1072 | 594 | 556 | 0.46 | 74128564 | 29449940 | tier1 | Out-of-frame | 368 | NA | 0.3835 |
| THCA | TCGA-E8-A432-01A | TCGA-E8-A432 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 57 | 47 | 29 | 0.35 | 42492091 | 29449940 | tier1 | In-frame | 5564 | NA | 0.38609 |
| THCA | TCGA-EL-A4KD-01A | TCGA-EL-A4KD | GTF2IRD1|ALK | GTF2IRD1 | ALK | 7 | 2 | 1 | -1 | 14 | 33 | 23 | 0.37 | 73935627 | 29446394 | tier1 | In-frame | 7538 | NA | 0.38516 |
| THCA | TCGA-DJ-A3US-01A | TCGA-DJ-A3US | STRN|ALK | STRN | ALK | 2 | 2 | -1 | -1 | 13 | 16 | 14 | 0.52 | 37143221 | 29446394 | tier1 | In-frame | 17107 | validated | 0 |
| UCS | TCGA-N9-A4Q4-01A | TCGA-N9-A4Q4 | DDX6|ALK | DDX6 | ALK | 11 | 2 | -1 | -1 | 10 | 2 | 1 | 0.083 | 118656761 | 29606725 | tier2 | In-frame | 4676 | NA | 0.38481 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | ELL|INSR | ELL | INSR | 19 | 19 | -1 | -1 | 26 | 9 | 9 | 0.37 | 18632731 | 7267907 | tier1 | Out-of-frame | 5517 | NA | 0.39013 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ACSS3|INSR | ACSS3 | INSR | 12 | 19 | 1 | -1 | 2 | 11 | 11 | 0.037 | 81545875 | 7143101 | tier2 | Out-of-frame | 328 | NA | 0.38842 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | HNRNPH1|INSR | HNRNPH1 | INSR | 5 | 19 | -1 | -1 | 51 | 43 | 41 | 1.2 | 179044990 | 7184648 | tier1 | In-frame | 7895 | NA | 0.39234 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | IFT81|INSR | IFT81 | INSR | 12 | 19 | 1 | -1 | 72 | 52 | 51 | 0.082 | 110574665 | 7184648 | tier1 | In-frame | 8083 | NA | 0.39009 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | MDM1|INSR | MDM1 | INSR | 12 | 19 | -1 | -1 | 15 | 12 | 11 | 0.27 | 68696400 | 7152938 | tier1 | In-frame | 10116 | NA | 0.38965 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | PI4K2B|INSR | PI4K2B | INSR | 4 | 19 | 1 | -1 | 2 | 1 | 1 | 100 | 25236053 | 7267907 | tier2 | In-frame | 12778 | NA | 0.38818 |
| COAD | TCGA-D5-6534-01A | TCGA-D5-6534 | TMEM216|KCNG3 | TMEM216 | KCNG3 | 11 | 2 | 1 | -1 | 7 | 5 | 5 | 3.2 | 61160151 | 42671719 | tier1 | 5UTR-CDS | 18011 | NA | 0 |
| BRCA | TCGA-C8-A134-01A | TCGA-C8-A134 | BRE|PRKCE | BRE | PRKCE | 2 | 2 | 1 | 1 | 13 | 25 | 24 | 1.3 | 28268666 | 46313347 | tier1 | In-frame | 2213 | NA | 0.38576 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | XRN1|PRKCE | XRN1 | PRKCE | 3 | 2 | -1 | 1 | 5 | 2 | 2 | 2 | 142089327 | 46411874 | tier1 | In-frame | 19989 | NA | 0 |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | HECW2|PRKCE | HECW2 | PRKCE | 2 | 2 | -1 | 1 | 4 | 1 | 1 | 0.4 | 197458232 | 46070139 | tier2 | NA | 7684 | NA | 0.38631 |
| BRCA | TCGA-AQ-A1H3-01A | TCGA-AQ-A1H3 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.019 | 14153601 | 14141522 | tier2 | Out-of-frame | 8184 | NA | 0.36098 |
| HNSC | TCGA-CR-7399-01A | TCGA-CR-7399 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 10 | 5 | 5 | 0.019 | 14153601 | 14141522 | tier1 | Out-of-frame | 8187 | NA | 0.36098 |
| KIRC | TCGA-BP-4968-01A | TCGA-BP-4968 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 3 | 1 | 1 | 0.019 | 14153601 | 14141522 | tier4 | Out-of-frame | 8185 | non-validated | 0.36098 |
| LGG | TCGA-S9-A6WH-01A | TCGA-S9-A6WH | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 41 | 49 | 42 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8190 | NA | 0.36098 |
| LUSC | TCGA-NC-A5HH-01A | TCGA-NC-A5HH | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 12 | 5 | 4 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8189 | NA | 0.36098 |
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