Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-IW-A3M4-01A | TCGA-IW-A3M4 | PHTF2|KBTBD2 | PHTF2 | KBTBD2 | 7 | 7 | 1 | -1 | 2 | 1 | 1 | 0.68 | 77531237 | 32919554 | tier3 | CDS-5UTR | 12770 | non-validated | 0.35642 |
| ACC | TCGA-OR-A5LO-01A | TCGA-OR-A5LO | PXN|PLA2G1B | PXN | PLA2G1B | 12 | 12 | -1 | -1 | 91 | 189 | 181 | 0.023 | 120703420 | 120763823 | tier4 | In-frame | 13992 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | PXN|PLA2G1B | PXN | PLA2G1B | 12 | 12 | -1 | -1 | 8 | 6 | 5 | 0.023 | 120703420 | 120763823 | tier1 | In-frame | 13991 | non-validated | 0 |
| KIRP | TCGA-SX-A7SM-01A | TCGA-SX-A7SM | PXN|PLA2G1B | PXN | PLA2G1B | 12 | 12 | -1 | -1 | 8 | 9 | 6 | 0.023 | 120703420 | 120760120 | tier1 | In-frame | 13993 | NA | 0 |
| LIHC | TCGA-DD-A73G-01A | TCGA-DD-A73G | GCN1L1|PLA2G1B | GCN1L1 | PLA2G1B | 12 | 12 | -1 | -1 | 3 | 3 | 2 | 0.6 | 120628101 | 120763823 | tier1 | In-frame | 7013 | NA | 0.36133 |
| STAD | TCGA-BR-A4J1-01A | TCGA-BR-A4J1 | RPS19|CEACAM3 | RPS19 | CEACAM3 | 19 | 19 | 1 | 1 | 226 | 7464 | 6641 | 0.53 | 42365281 | 42314003 | tier1 | Out-of-frame | 15035 | NA | 0 |
| MESO | TCGA-UT-A88E-01B | TCGA-UT-A88E | ALG9|PDGFD | ALG9 | PDGFD | 11 | 11 | -1 | -1 | 44 | 42 | 38 | 0.01 | 111706888 | 103818452 | tier1 | In-frame | 839 | NA | 0.36235 |
| SARC | TCGA-DX-A8BZ-01A | TCGA-DX-A8BZ | DIAPH2|PLAC1 | DIAPH2 | PLAC1 | X | X | 1 | -1 | 3 | 2 | 2 | 0.37 | 96018119 | 133736152 | tier1 | CDS-5UTR | 4821 | NA | 0.35318 |
| SARC | TCGA-IE-A4EH-01A | TCGA-IE-A4EH | NAPA|PLAC1 | NAPA | PLAC1 | 19 | X | -1 | -1 | 112 | 88 | 82 | 100 | 48018100 | 133700770 | tier1 | CDS-5UTR | 11087 | NA | 0.35082 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | FAM70A|FPR2 | FAM70A | FPR2 | X | 19 | -1 | 1 | 4 | 2 | 2 | 0.92 | 119438204 | 52271898 | tier1 | CDS-5UTR | 6201 | non-validated | 0.34827 |
| BLCA | TCGA-GV-A3QG-01A | TCGA-GV-A3QG | TPM1|ALK | TPM1 | ALK | 15 | 2 | 1 | -1 | 248 | 232 | 211 | 0.18 | 63354844 | 29446394 | tier1 | In-frame | 18489 | NA | 0 |
| KIRP | TCGA-2Z-A9JJ-01A | TCGA-2Z-A9JJ | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 28 | 15 | 11 | 0.35 | 42472827 | 29446394 | tier1 | In-frame | 5558 | NA | 0.38609 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | STRN|ALK | STRN | ALK | 2 | 2 | -1 | -1 | 48 | 55 | 48 | 0.52 | 37143221 | 29446394 | tier1 | In-frame | 17108 | NA | 0 |
| LUAD | TCGA-50-8460-01A | TCGA-50-8460 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 13 | 13 | 11 | 0.35 | 42492091 | 29446394 | tier1 | In-frame | 5559 | NA | 0.38609 |
| LUAD | TCGA-67-6215-01A | TCGA-67-6215 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 31 | 40 | 37 | 0.35 | 42491871 | 29446394 | tier1 | In-frame | 5560 | validated | 0.38609 |
| LUAD | TCGA-67-6216-01A | TCGA-67-6216 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 10 | 10 | 9 | 0.35 | 42492091 | 29446394 | tier1 | In-frame | 5561 | NA | 0.38609 |
| LUAD | TCGA-78-7163-01A | TCGA-78-7163 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 51 | 61 | 51 | 0.35 | 42522656 | 29446394 | tier2 | In-frame | 5562 | NA | 0.38609 |
| LUAD | TCGA-86-A4P8-01A | TCGA-86-A4P8 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 2 | 3 | 3 | 0.35 | 42552694 | 29446394 | tier3 | In-frame | 5563 | NA | 0.38609 |
| OV | TCGA-23-1027-01A | TCGA-23-1027 | C2orf61|ALK | C2orf61 | ALK | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 4.4 | 47357080 | 29754982 | tier2 | Out-of-frame | 2689 | NA | 0 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | SMEK2|ALK | SMEK2 | ALK | 2 | 2 | -1 | -1 | 4 | 7 | 6 | 4.1 | 55804451 | 29940563 | tier1 | In-frame | 16409 | NA | 0 |
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