Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | AMFR|ITGAM | AMFR | ITGAM | 16 | 16 | -1 | 1 | 91 | 115 | 100 | 2.1 | 56419831 | 31332562 | tier1 | In-frame | 873 | NA | 0.37448 |
| LAML | TCGA-AB-2939-03A | TCGA-AB-2939 | BZW2|GUSB | BZW2 | GUSB | 7 | 7 | 1 | -1 | 2 | 5 | 5 | 1.8 | 16714213 | 65432894 | tier2 | Out-of-frame | 2292 | NA | 0.35616 |
| HNSC | TCGA-MZ-A7D7-01A | TCGA-MZ-A7D7 | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 6 | 2 | 2 | 0.16 | 136857197 | 136910543 | tier1 | In-frame | 19518 | NA | 0 |
| LIHC | TCGA-CC-A3MC-01A | TCGA-CC-A3MC | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 5 | 2 | 2 | 0.16 | 136671203 | 136898827 | tier1 | Out-of-frame | 19517 | NA | 0 |
| MESO | TCGA-TS-A7OU-01B | TCGA-TS-A7OU | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 2 | 4 | 4 | 0.16 | 136726496 | 136907073 | tier2 | Out-of-frame | 19520 | NA | 0 |
| PCPG | TCGA-QT-A5XM-01A | TCGA-QT-A5XM | VAV2|BRD3 | VAV2 | BRD3 | 9 | 9 | -1 | -1 | 5 | 2 | 1 | 0.16 | 136857197 | 136918712 | tier2 | CDS-5UTR | 19519 | NA | 0 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | ERCC3|MAP3K2 | ERCC3 | MAP3K2 | 2 | 2 | -1 | -1 | 6 | 5 | 5 | 0.33 | 128038023 | 128072459 | tier1 | In-frame | 5764 | NA | 0.38756 |
| LGG | TCGA-FG-A60L-01A | TCGA-FG-A60L | NDEL1|CHD3 | NDEL1 | CHD3 | 17 | 17 | 1 | 1 | 22 | 14 | 14 | 0.052 | 8352004 | 7813746 | tier1 | In-frame | 11271 | NA | 0.36958 |
| LIHC | TCGA-FV-A4ZQ-01A | TCGA-FV-A4ZQ | BBX|ALCAM | BBX | ALCAM | 3 | 3 | 1 | 1 | 3 | 1 | 1 | 0.12 | 107497366 | 105238911 | tier2 | In-frame | 1955 | validated | 0.36176 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | AHDC1|ALCAM | AHDC1 | ALCAM | 1 | 3 | -1 | 1 | 2 | 4 | 1 | 1.1 | 27929908 | 105238911 | tier3 | 5UTR-CDS | 681 | NA | 0.36218 |
| UCS | TCGA-N6-A4VF-01A | TCGA-N6-A4VF | AARSD1|CHRNB1 | AARSD1 | CHRNB1 | 17 | 17 | -1 | 1 | 8 | 4 | 3 | 0.2 | 41116123 | 7357616 | tier1 | Out-of-frame | 20 | NA | 0.34339 |
| SARC | TCGA-3B-A9HI-01A | TCGA-3B-A9HI | PARVA|USP47 | PARVA | USP47 | 11 | 11 | 1 | 1 | 2 | 2 | 2 | 4.3 | 12399330 | 11970025 | tier2 | Out-of-frame | 12311 | NA | 0.3789 |
| UCEC | TCGA-BK-A26L-01A | TCGA-BK-A26L | ARID3B|USP47 | ARID3B | USP47 | 15 | 11 | 1 | 1 | 3 | 15 | 15 | 1.2 | 74833671 | 11906014 | tier1 | 5UTR-CDS | 1374 | non-validated | 0.36912 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | CMC1|GLB1 | CMC1 | GLB1 | 3 | 3 | 1 | -1 | 9 | 9 | 8 | 0.046 | 28304871 | 33114205 | tier1 | Out-of-frame | 3880 | NA | 0.35047 |
| LUSC | TCGA-37-A5EL-01A | TCGA-37-A5EL | SEC23B|CNGB3 | SEC23B | CNGB3 | 20 | 8 | 1 | -1 | 13 | 1 | 1 | 0.53 | 18516386 | 87751964 | tier4 | In-frame | 15505 | NA | 0 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | ANK3|CDK1 | ANK3 | CDK1 | 10 | 10 | -1 | 1 | 11 | 11 | 11 | 0.29 | 61894029 | 62539899 | tier1 | CDS-5UTR | 904 | NA | 0.36802 |
| PRAD | TCGA-YL-A8SK-01B | TCGA-YL-A8SK | ARHGAP32|PRDM10 | ARHGAP32 | PRDM10 | 11 | 11 | -1 | -1 | 3 | 4 | 3 | 2.3 | 128963516 | 129782120 | tier1 | In-frame | 1248 | NA | 0.34449 |
| HNSC | TCGA-CV-7410-01A | TCGA-CV-7410 | KRT5|FOS | KRT5 | FOS | 12 | 14 | -1 | 1 | 4 | 1 | 1 | 0.19 | 52910965 | 75745529 | tier4 | NA | 9152 | NA | 0.37579 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | PSMG2|SETMAR | PSMG2 | SETMAR | 18 | 3 | 1 | 1 | 13 | 15 | 15 | 0.51 | 12706720 | 4354582 | tier1 | Out-of-frame | 13735 | NA | 0.35005 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | MACROD2|DCLK2 | MACROD2 | DCLK2 | 20 | 4 | 1 | 1 | 4 | 6 | 6 | 0.76 | 13983050 | 151023630 | tier1 | In-frame | 9743 | NA | 0.35002 |
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