Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-AA75-01A | TCGA-DK-AA75 | ANXA4|GKN1 | ANXA4 | GKN1 | 2 | 2 | 1 | 1 | 6 | 1 | 1 | 0.75 | 70008706 | 69204627 | tier3 | In-frame | 1046 | NA | 0.34458 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | USP34|GKN1 | USP34 | GKN1 | 2 | 2 | -1 | 1 | 11 | 1 | 1 | 1.1 | 61483519 | 69204627 | tier2 | Out-of-frame | 19363 | NA | 0 |
| LUAD | TCGA-49-4514-01A | TCGA-49-4514 | TBC1D22A|GKN1 | TBC1D22A | GKN1 | 22 | 2 | 1 | 1 | 2 | 1 | 1 | 1.3 | 47274619 | 69204627 | tier3 | In-frame | 17468 | NA | 0 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | BFAR|SPNS1 | BFAR | SPNS1 | 16 | 16 | 1 | 1 | 52 | 37 | 36 | 0.83 | 14749067 | 28994178 | tier1 | In-frame | 2074 | NA | 0.36236 |
| HNSC | TCGA-CQ-5333-01A | TCGA-CQ-5333 | EPS8L2|AGPAT2 | EPS8L2 | AGPAT2 | 11 | 9 | 1 | -1 | 319 | 271 | 251 | 0.004 | 709608 | 139569259 | tier1 | Out-of-frame | 5715 | NA | 0.36452 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | PRRG2|AGPAT2 | PRRG2 | AGPAT2 | 19 | 9 | 1 | -1 | 2 | 10 | 9 | 100 | 50086561 | 139572008 | tier4 | Out-of-frame | 13656 | NA | 0.35102 |
| LGG | TCGA-QH-A6CV-01A | TCGA-QH-A6CV | TRAF4|FASN | TRAF4 | FASN | 17 | 17 | 1 | -1 | 14 | 4 | 3 | 0.87 | 27071273 | 80038798 | tier1 | Out-of-frame | 18556 | NA | 0 |
| BRCA | TCGA-AC-A3EH-01A | TCGA-AC-A3EH | UBE2Q2|NRG4 | UBE2Q2 | NRG4 | 15 | 15 | 1 | -1 | 17 | 13 | 13 | 0.45 | 76183355 | 76235995 | tier1 | Out-of-frame | 19093 | NA | 0 |
| SKCM | TCGA-FW-A3I3-06A | TCGA-FW-A3I3 | AC087465.1|NRG4 | AC087465.1 | NRG4 | 15 | 15 | -1 | -1 | 42 | 21 | 19 | 0.003 | 77544709 | 76235995 | tier1 | 5UTR-CDS | 200 | NA | 0.34742 |
| BLCA | TCGA-GC-A3YS-01A | TCGA-GC-A3YS | MIPOL1|NLGN1 | MIPOL1 | NLGN1 | 14 | 3 | 1 | 1 | 3 | 2 | 2 | 0.61 | 37777724 | 173993105 | tier1 | Out-of-frame | 10383 | NA | 0.35553 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | FNDC3B|NLGN1 | FNDC3B | NLGN1 | 3 | 3 | 1 | 1 | 7 | 3 | 3 | 0.016 | 171944737 | 173993105 | tier1 | Out-of-frame | 6610 | NA | 0.35935 |
| LUAD | TCGA-55-8092-01A | TCGA-55-8092 | RSRC1|NLGN1 | RSRC1 | NLGN1 | 3 | 3 | 1 | 1 | 2 | 4 | 4 | 0.71 | 158072697 | 173525470 | tier3 | In-frame | 15159 | NA | 0 |
| LUSC | TCGA-56-7730-01A | TCGA-56-7730 | MYNN|NLGN1 | MYNN | NLGN1 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.13 | 169492349 | 173525470 | tier4 | Out-of-frame | 10938 | NA | 0.36546 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | VPS8|NLGN1 | VPS8 | NLGN1 | 3 | 3 | 1 | 1 | 31 | 17 | 14 | 1.5 | 184742177 | 173322069 | tier1 | CDS-5UTR | 19678 | NA | 0 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | MKRN1|NLGN1 | MKRN1 | NLGN1 | 7 | 3 | -1 | 1 | 13 | 5 | 4 | 0.32 | 140171683 | 173993105 | tier1 | Out-of-frame | 10435 | validated | 0.3645 |
| SKCM | TCGA-ER-A19S-06A | TCGA-ER-A19S | C9orf25|NLGN1 | C9orf25 | NLGN1 | 9 | 3 | -1 | 1 | 3 | 1 | 1 | 1.1 | 34458202 | 173993105 | tier2 | Out-of-frame | 2818 | NA | 0 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | ANKRD11|LINGO1 | ANKRD11 | LINGO1 | 16 | 15 | -1 | -1 | 22 | 15 | 14 | 0.28 | 89484692 | 77908242 | tier1 | 5UTR-CDS | 953 | non-validated | 0.38057 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | SCAPER|LINGO1 | SCAPER | LINGO1 | 15 | 15 | -1 | -1 | 3 | 4 | 3 | 0.57 | 77176153 | 77908242 | tier1 | In-frame | 15385 | NA | 0 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | ZMIZ1|BTD | ZMIZ1 | BTD | 10 | 3 | 1 | 1 | 31 | 11 | 7 | 0.16 | 80921890 | 15676931 | tier1 | 5UTR-CDS | 20318 | NA | 0 |
| PAAD | TCGA-HV-A5A5-01A | TCGA-HV-A5A5 | ARF3|WNT10B | ARF3 | WNT10B | 12 | 12 | -1 | -1 | 9 | 7 | 7 | 0.33 | 49351093 | 49364352 | tier1 | 5UTR-5UTR | 1182 | NA | 0.3686 |
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