Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | FGFR1|SLC20A2 | FGFR1 | SLC20A2 | 8 | 8 | -1 | -1 | 3 | 1 | 1 | 0.22 | 38277057 | 42330172 | tier2 | CDS-5UTR | 6455 | NA | 0.3837 |
| BRCA | TCGA-E2-A574-01A | TCGA-E2-A574 | FGFR1|ADAM18 | FGFR1 | ADAM18 | 8 | 8 | -1 | 1 | 15 | 16 | 10 | 1.8 | 38314874 | 39463826 | tier1 | Out-of-frame | 6454 | NA | 0.38508 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | FBLN1|SMC1B | FBLN1 | SMC1B | 22 | 22 | 1 | -1 | 6 | 9 | 8 | 1.5 | 45898944 | 45804779 | tier1 | In-frame | 6285 | NA | 0.36894 |
| SARC | TCGA-IE-A4EH-01A | TCGA-IE-A4EH | ITGA8|FAM188A | ITGA8 | FAM188A | 10 | 10 | -1 | -1 | 33 | 7 | 6 | 2.1 | 15713602 | 15889942 | tier1 | In-frame | 8386 | NA | 0.36232 |
| LUSC | TCGA-37-4135-01A | TCGA-37-4135 | PIK3C3|TRPC6 | PIK3C3 | TRPC6 | 18 | 11 | 1 | -1 | 10 | 5 | 4 | 0.45 | 39573305 | 101375529 | tier1 | Out-of-frame | 12832 | non-validated | 0.37888 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|UGCG | TULP3 | UGCG | 12 | 9 | 1 | 1 | 2 | 4 | 4 | 5.3 | 3043727 | 114676885 | tier2 | Out-of-frame | 18961 | NA | 0 |
| LGG | TCGA-DU-6407-02A | TCGA-DU-6407 | TULP3|C12orf57 | TULP3 | C12orf57 | 12 | 12 | 1 | 1 | 29 | 38 | 31 | 0.25 | 3018746 | 7054934 | tier1 | Out-of-frame | 18957 | non-validated | 0 |
| LUSC | TCGA-34-8456-01A | TCGA-34-8456 | TULP3|GGNBP2 | TULP3 | GGNBP2 | 12 | 17 | 1 | 1 | 5 | 8 | 8 | 1.1 | 3043727 | 34937774 | tier1 | In-frame | 18960 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|CTD-2021H9.3 | TULP3 | CTD-2021H9.3 | 12 | 12 | 1 | -1 | 172 | 76 | 75 | 0.74 | 3000154 | 71441459 | tier1 | Out-of-frame | 18958 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|FAM190B | TULP3 | FAM190B | 12 | 10 | 1 | 1 | 13 | 11 | 11 | 2.9 | 3043727 | 86177527 | tier1 | In-frame | 18959 | NA | 0 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | SYNJ2|CDK19 | SYNJ2 | CDK19 | 6 | 6 | 1 | -1 | 3 | 7 | 6 | 1.6 | 158487667 | 111067404 | tier1 | Out-of-frame | 17254 | NA | 0 |
| BLCA | TCGA-XF-AAMG-01A | TCGA-XF-AAMG | SYNJ2|SCN11A | SYNJ2 | SCN11A | 6 | 3 | 1 | -1 | 6 | 2 | 2 | 0.49 | 158483196 | 38962746 | tier1 | Out-of-frame | 17256 | NA | 0 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | SYNJ2|ZDHHC14 | SYNJ2 | ZDHHC14 | 6 | 6 | 1 | 1 | 25 | 53 | 44 | 0.56 | 158403120 | 157963617 | tier1 | Out-of-frame | 17257 | NA | 0 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | SYNJ2|KIF25 | SYNJ2 | KIF25 | 6 | 6 | 1 | 1 | 7 | 9 | 9 | 0.42 | 158403120 | 168439233 | tier1 | Out-of-frame | 17255 | NA | 0 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | ADCY2|RPAP2 | ADCY2 | RPAP2 | 5 | 1 | 1 | 1 | 3 | 1 | 1 | 0.21 | 7698487 | 92846281 | tier3 | In-frame | 472 | NA | 0.35311 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | ADCY2|CLPTM1L | ADCY2 | CLPTM1L | 5 | 5 | 1 | -1 | 127 | 56 | 51 | 0.58 | 7789913 | 1320846 | tier1 | In-frame | 470 | NA | 0.35673 |
| SKCM | TCGA-BF-AAP6-01A | TCGA-BF-AAP6 | ADCY2|PARP8 | ADCY2 | PARP8 | 5 | 5 | 1 | 1 | 44 | 9 | 9 | 0.48 | 7784562 | 50055477 | tier1 | Out-of-frame | 471 | NA | 0.35309 |
| LIHC | TCGA-BD-A2L6-01A | TCGA-BD-A2L6 | MLLT10|MINPP1 | MLLT10 | MINPP1 | 10 | 10 | 1 | 1 | 19 | 11 | 10 | 0.44 | 21823733 | 89311839 | tier1 | Out-of-frame | 10507 | NA | 0.36251 |
| SKCM | TCGA-RP-A695-06A | TCGA-RP-A695 | MLLT10|SLC16A1 | MLLT10 | SLC16A1 | 10 | 1 | 1 | -1 | 23 | 31 | 22 | 0.23 | 21823733 | 113471974 | tier1 | CDS-5UTR | 10510 | NA | 0.36719 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | MLLT10|KCNJ6 | MLLT10 | KCNJ6 | 10 | 21 | 1 | -1 | 7 | 3 | 3 | 0.011 | 21827841 | 39087434 | tier1 | Out-of-frame | 10506 | NA | 0.36778 |
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