Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-60-2713-01A | TCGA-60-2713 | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 16 | 59 | 51 | 7.7 | 141645584 | 141685598 | tier1 | Out-of-frame | 5435 | non-validated | 0.38833 |
| OV | TCGA-61-2109-01A | TCGA-61-2109 | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 4 | 4 | 4 | 7.7 | 141645584 | 141712806 | tier1 | Out-of-frame | 5436 | NA | 0.38833 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | CCDC91|PTK2 | CCDC91 | PTK2 | 12 | 8 | 1 | -1 | 8 | 5 | 5 | 0.48 | 28605587 | 141696793 | tier1 | In-frame | 3196 | NA | 0.38714 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | EXOC4|PTAFR | EXOC4 | PTAFR | 7 | 1 | 1 | -1 | 9 | 16 | 15 | 0.055 | 133314894 | 28477570 | tier1 | CDS-5UTR | 5902 | non-validated | 0.37327 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | MAN2C1|PTPN9 | MAN2C1 | PTPN9 | 15 | 15 | -1 | -1 | 3 | 1 | 1 | 0.46 | 75658863 | 75772255 | tier3 | Out-of-frame | 9821 | NA | 0.3624 |
| LGG | TCGA-CS-5396-01A | TCGA-CS-5396 | SIN3A|PTPN9 | SIN3A | PTPN9 | 15 | 15 | -1 | -1 | 3 | 5 | 5 | 0.27 | 75722528 | 75819602 | tier1 | In-frame | 15935 | NA | 0 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | ARHGAP35|COL22A1 | ARHGAP35 | COL22A1 | 19 | 8 | 1 | -1 | 103 | 36 | 30 | 0.047 | 47440665 | 139793223 | tier1 | Out-of-frame | 1249 | NA | 0.33261 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | SNTB1|COL22A1 | SNTB1 | COL22A1 | 8 | 8 | -1 | -1 | 5 | 5 | 3 | 4.1 | 121705932 | 139715590 | tier1 | Out-of-frame | 16512 | NA | 0 |
| BRCA | TCGA-E2-A15H-01A | TCGA-E2-A15H | TRAPPC9|COL22A1 | TRAPPC9 | COL22A1 | 8 | 8 | -1 | -1 | 28 | 16 | 13 | 1 | 141370149 | 139768072 | tier1 | Out-of-frame | 18579 | non-validated | 0 |
| LUAD | TCGA-J2-A4AE-01A | TCGA-J2-A4AE | TSNARE1|COL22A1 | TSNARE1 | COL22A1 | 8 | 8 | -1 | -1 | 10 | 8 | 8 | 0.47 | 143365774 | 139833654 | tier1 | Out-of-frame | 18779 | NA | 0 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | NSMCE2|COL22A1 | NSMCE2 | COL22A1 | 8 | 8 | 1 | -1 | 13 | 12 | 9 | 0.27 | 126194498 | 139856401 | tier2 | In-frame | 11798 | NA | 0.34379 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | DPY19L4|SDC2 | DPY19L4 | SDC2 | 8 | 8 | 1 | 1 | 4 | 3 | 3 | 0.019 | 95738669 | 97605708 | tier1 | Out-of-frame | 5093 | NA | 0.36808 |
| TGCT | TCGA-2G-AAFV-01A | TCGA-2G-AAFV | LIN28A|CD52 | LIN28A | CD52 | 1 | 1 | 1 | 1 | 18 | 11 | 11 | 0.79 | 26738073 | 26646662 | tier1 | In-frame | 9354 | NA | 0.33554 |
| BRCA | TCGA-BH-A0EI-01A | TCGA-BH-A0EI | RAB11FIP1|HTRA4 | RAB11FIP1 | HTRA4 | 8 | 8 | -1 | 1 | 62 | 65 | 60 | 0.014 | 37727938 | 38836734 | tier1 | In-frame | 14039 | NA | 0 |
| HNSC | TCGA-QK-A6VB-01A | TCGA-QK-A6VB | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 7 | 15 | 14 | 0.1 | 165697666 | 165796066 | tier1 | Out-of-frame | 3965 | NA | 0.3389 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 27 | 26 | 22 | 0.1 | 165697666 | 165772483 | tier1 | In-frame | 3964 | NA | 0.3389 |
| LUSC | TCGA-18-3415-01A | TCGA-18-3415 | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 2 | 3 | 3 | 0.1 | 165697666 | 165755240 | tier4 | Out-of-frame | 3963 | non-validated | 0.3389 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | TTC21B|SLC38A11 | TTC21B | SLC38A11 | 2 | 2 | -1 | -1 | 50 | 16 | 14 | 0.017 | 166810195 | 165802237 | tier1 | Out-of-frame | 18833 | validated | 0 |
| OV | TCGA-24-2023-01A | TCGA-24-2023 | MXD1|ANTXR1 | MXD1 | ANTXR1 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 0.027 | 70148897 | 69267176 | tier2 | In-frame | 10867 | NA | 0.36962 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | ZNF638|ANTXR1 | ZNF638 | ANTXR1 | 2 | 2 | 1 | 1 | 2 | 13 | 11 | 1.4 | 71645769 | 69472357 | tier2 | Out-of-frame | 20599 | NA | 0 |
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